BtaINT0131657 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19845471-19846257:-
Coord C1 exon
chr3:19846125-19846257
Coord A exon
chr3:19845637-19846124
Coord C2 exon
chr3:19845471-19845636
Length
488 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TCACCCTTCTGCTTCCTCAGGAT
3' ss Score
10.02
Exon sequences
Seq C1 exon
AGTTACTGAAAGCTCTCGAAATTATGGTTACAATCCTTCTCCTGTGAAGCCTGAAGGACTTCGCCGCCCACCAAGTAAAACTAGTATGCATCAGAGCCGACGACTCATGGCCTCTGCTCAGCCAAACCCTGAT
Seq A exon
GTAAGTGGCCTTTCTCAAGCTGTGCCTTACCCAGCCTCCTGTTTTACTCTAGAGCGCGAGTAAAGGAGCGTTCTTCTCGTGTCAAGTCTGTCACCGTAATTACTGTTGGATATTTTCCTTTTTCTCTGGCCTTGACTTCCTGCCTCATTTTCCTTCATCCAGCATCTAATCTTGCTATAGTCTCAACCCCTTCATGCCTAACTGTACCTAAAAGCAGGGATTCCAAGAGGTCCTTTGCATTTACTCGTTTTTTTTATACATATATATTTTTTGGCTTCACCAGGCCCCAGGTGCTGCACGCGGGATCTTCTATCTTCCTTGCAGCATGGAGAATCTTCTTTAGTTGCAGTTTGTGGGATCCAGTTCTCTGACCAGGGATCCACACCAGGTCCCCTCTCCTGGGAGTGTGGAATCCCAGCCACTGGACCACCAGGGAAGTCCCTCTCCATTTACTCTTATTCCTTCTTTTCACCCTTCTGCTTCCTCAG
Seq C2 exon
GATATCCTGACCCTGTCCAGCAGCACAGAAAGTGAGGGGGAAAGTGGGACCAGCCGGAAGCCCACTGCTGGCCAGACTTCAGCCGCAGCCGTGGACAGTGATGATATCCAGACCATCTCCTCTGGCTCTGAAGGGGATGACTTTGAGGACAAGAAGAACATGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098:ENSBTAT00000000107:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(9.7=100)
A:
NA
C2:
PF0085623=SET=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAAGCTCTCGAAATTATGGT
R:
CAGACATGTTCTTCTTGTCCTCA
Band lengths:
295-783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]