BtaINT0131659 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19873614-19874907:-
Coord C1 exon
chr3:19874637-19874907
Coord A exon
chr3:19873781-19874636
Coord C2 exon
chr3:19873614-19873780
Length
856 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GGCTTTGACCTTTTCTACATGTG
3' ss Score
1.06
Exon sequences
Seq C1 exon
AGGACAGCAATATGTCCTCCCTCCCTGGGTGCCTTGGTTTGGCAGCTGCAACAGCAGCAGTGGAGTCTGAAGAAATTGCAGAGCTGCAACAGTCCGTGGTTGAGGAGCTGGGCATCTCAATGGAGGAGCTTCGACAGTTCATTGATGAAGAACTGGAAAAGATGGACTGTGTACAGCAGCGCAAGAAGCAACTAGCAGAGTTGGAGACTTGGGTAATACAAAAGGAATCTGAGGTGGCCCATGTTGACCAACTCTTTGATGATGCATCCAG
Seq A exon
GTAAGAACCACATAGGAAATAGTAAATCTGCCCATTGGCAGACATTTTTAAAATAGTATAATTGTTATGACATTGTACTTTAGAAGGTACAGACATGGAGAACCTTGCTCTTCCTCAAAGGTTAAGGCCCAAATTGTCTGCACAGTCATCATATAATATTCATCTATCAGCAGTTAATATATGATCAGCAGTGAAAGTTAGTCACACAGTCCTGTCTGACTCTTTGTGATCCCATGGACTGTGGCCCACCTGGTTCCTCCGTCCATATAATTCTCCAGGGAAGAGTACTGGAATGGGTTGCCATTTCCTTCTCCAGGAGATCTTCCTGACCCAGGGGTCAAACCCAGGTCTCCTGCATTGCAGGCGGATTCTTTACCATCTGAGCTACTGATCAGCAGTAGGGGAGTCCAAGTCTTGAGTCCCTTCCGCTTCTTTATCCTACACTCTACTTCAGAACAGCTGTTTTGTTTTCTTACTAGAATCATCTAGGGAGTGCATATTGTGAAGATTTGCTGTTTTATGTAACTGTGAAGCTTTAACAAGTTCCTCGAACCTTATTTCTACTCTAAACCCCCAGAAGAGTGGTTTCTTTTGCCCTACTTGTCACTTAGAATGTATTTTCAAACAACAAAAGGTAAATAATGAAGTTGAAAGGACCATGCTTTGAACTTACTTTGGATTTTTCAAGAAACCACAATTTTTTTTTTTTTTTCTATGGGATAAGCCTCTTAAATTCAAAACAGAGACACTTTGGAATATGATCTGTTTGAATAGAAGTCATTATATAGTTAAATATATATAAATAAATTCTAATGGCTTTTACCCCTGCTTCTGCTGGCTTTGACCTTTTCTACAT
Seq C2 exon
GTGTTCCAATATTAGGGCAGTGACTAACTGTGAGTCTTTGGTGAAGGACTTTTATTCCAAACTGGGACTACAGTACCGGGACAGCAGCTCTGAAGATGAAGCTTCCCGGCCTACAGAAATAATTGAGATTCCTGATGAAGACGATGATGTCCTTAGTATTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098:ENSBTAT00000000107:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGCAGCAGTGGAGTCTG
R:
ATTTCTGTAGGCCGGGAAGCT
Band lengths:
343-1199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]