BtaINT0131679 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19138192-19139020:+
Coord C1 exon
chr12:19138192-19138411
Coord A exon
chr12:19138412-19138920
Coord C2 exon
chr12:19138921-19139020
Length
509 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
AACTTTGTTTTCCTTTTCAGAGG
3' ss Score
10.82
Exon sequences
Seq C1 exon
GAAGATTACTAAGCAGATCTGACACTGAGAAACCTGATGCTATTGATGAAAATGGAAAAGAAGAGAATATTATGAAAAATATGTTTTCCAGAAAGAGGAAAATAGAAGTTGCAGATTGTGAGGTTGAAGTTATCCCAATAGAACTGGAAGCACGTCCTAGAAGTATGGAGACTCAGGAGTATCCACCTAAGCTCCATAATAATACCAAAGAGCCTATTAC
Seq A exon
GTGAGTGAGATCATAGGAACCCAGTCAAGATTGACCTATACTGTTTAATACCAATTAAGAGTAGTTCTTTTTCTTCTTTCTTGTTTTCCACTCCAACTTCTGTATCTCCTGTATATCAGTTTGCTTCCCAGTTGTAAGTTTCACACTGAGAAATCTAGGGCACTTAAATTTAAAAATCTAACCAACATACTGTATTTTCTCAGTTTCCATCTGTGGAACTTCATCTTTAAAAACTTTGACTTTAATCAGATTGTTTATGGATGTCATGACTTTGGCAGTTCTTTTTATTTTCTATAACCATTTTATTTGCAAAGGTTTTCTTCGTTTTTTAAATATACTTCCAGAATGATTGGCTTTAAAATATGACTATTCTAGTGAGGAGTAGGCATAGGTGTTATAACTTAGATTAATTTCTAATGAATATTTACATAACTGATGCTATCTATATTTCAGGGCACAATAAAGAGCATTTTTAGTGATTTACAGAATAACTTTGTTTTCCTTTTCAG
Seq C2 exon
AGGAATGAAATATAACAGCATTTCAAGAATTCGATATCATTCTGTCATAAGAAGTCCTAAAACCAAGACCGTCATTATTCAACACAATGGGAAAAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329:ENSBTAT00000009641:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=NA C2=0.529
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(23.5=100)
A:
NA
C2:
PF0085623=SET=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTACTAAGCAGATCTGACACTGA
R:
TCCCATTGTGTTGAATAATGACGGT
Band lengths:
310-819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development