RnoINT0133874 @ rn6
Intron Retention
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39721615-39722700:-
Coord C1 exon
chr15:39722502-39722700
Coord A exon
chr15:39721715-39722501
Coord C2 exon
chr15:39721615-39721714
Length
787 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
AACTTTTCTTTTCCTTTCAGGGA
3' ss Score
11.58
Exon sequences
Seq C1 exon
GAAGGTTACTGAGCAGAGCCACTCCTGAGAAAACTAACATTGGTGAAAGTGAAAGTGAGCAGCAGCACACCGTGAAAAATTCATTCTCTAAAAAGAGGAAAATAGAAGTTGTATGTTCAGATCGTCAAACACACTGTGAAAGTCCTAAAACTGAGGGATGTCCTCCTAAGTTTAGCAGTGATCTCGAAGAGCCCGTTGT
Seq A exon
GTAAGTAAAAACTCAGAAACGTTTGGGGTTAGTACCTCTGTGTCTGTTTTTCTCTCTTTCCACCATCCCTCCCCTCAACATCATCCTGCCTCATAATTTAAGTTTAACACTTCTAGAAATCCAGCATTCTTACCTTAGTATCTAGTCAGCACATTCCCTTCTGTGCCCCATTTCCGAGTTCACTGTGGATGACTTTCATCTGATTCGTTATGAATAGTATACATTTTAATTTTCTGTATCTCCATTCTATTCGGAAAGCTTTATTAGGGTCTCTTAAGTGTTTAAAAACACATTTTGAGGGGCTGGGGATTTAGCTCAGTGGTAGAGTGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAACCACATTTTGAAATTATTAATATCTAATGATTACCTTTTTCTTCCTCCACTAAGTAGCATAGGTATAATATAGATTAATTTCTTTAATATTTTAATTTTAAATTTATGTGTATGGGTGTTTTGCCTGTATCACTTGTGTGCCTGGTGCCCTAAGGGGCCAGAAATGGATTTTGGATCCCCTGGAACTGGAGTTATAGATGATTATGAGCTGCCCTGTGGGTGCGGGGAATTGAACCATGACCTCTGGAAGAGCAGCTAGTACTCTTAACCACTGATCCCTTTCTTCAGTCCCTAGACTAATTTCTAACAATAATGGAAGCTTATGAGCTAATGATATTACCTATATCTTTTGGTGATACACAGAGTAACTTTTCTTTTCCTTTCAG
Seq C2 exon
GGAAATGAATAATAGAAATATTTCAAGAACTCAGCGTCATTCAGTCATTAGAAGACCTAAATCCAAGACAGATGTTTTTCATTACAATGAGAAAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680:ENSRNOT00000036781:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=NA C2=0.735
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(21.4=100)
A:
NA
C2:
PF0085623=SET=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTTACTGAGCAGAGCCAC
R:
TTGTAATGAAAAACATCTGTCTTGGA
Band lengths:
286-1073
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]