BtaINT0131689 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024822 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr11:102392904-102395756:-
Coord C1 exon
chr11:102395641-102395756
Coord A exon
chr11:102392976-102395640
Coord C2 exon
chr11:102392904-102392975
Length
2665 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
AGCAGTCTAATTTTTTCCAGAGG
3' ss Score
4.65
Exon sequences
Seq C1 exon
AAAAAGACTTACCGTCTCATGTTCAGGAGATGCACAAAAGAAAGGAATTTCTTGATCATCAACTTGATGAACTTTCCCGCCAGCGTGCTTTATGCCGAGGTGGAAGGGAATCGCAG
Seq A exon
GTATCTAAACATTTCTTGATCAGTGTTTATAACAGCTCATAGATAAACTAGTTGACTATTTGATGCTGTTCTTTTGTTGTGAAATAGTATATAATTTGTGTAAAAGATGTATACAAAAATGGTATCTTTACATTAGGAGTTAAACGTTTTTTTAAAGGACCAGATAGTAAATATTTTAGACTTTACAGGCCTATGTAGAGTCTCTTAGCCACTCAACTCTGCTGTTGTAGCCTGAAGACAGCAGCAGTTGGTAACAGGTAAATGATGTGCCAAGGGTTGGCCTGCTAGGCAGACAGGAAGAGCCAACCTACAATACCTTGGACAGATCTGCATCTTAAATACAGTATTAAGAATTTATCAGACTTCCCTGGTGGTCCAGTGGTTAAGAATCTGAGCTTTCCACTGCAGAGCGTACAGGTTCAATCCCTGGCTGAGGAACTAAGATCCCACATACTTCACTGTGTGGTCAAAAAAAGAGAATTTATCTAATTCAGTTCAGTTGCTCAGTCGTGTCTGACTCTGCGACCCCATGAATCGCAGCTCGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACCCAAACTCACGTCCATCGAGTCGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATTGGAGTCTTTTCCAGTGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCAGTCCTTCCAAAGAACACCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAATTCAAAAGCATCAATTCTTCGGTGCCCAGCTTTCTTCACAGTCCAACTCTCACATCCACACATGACCACTGGAAAAACCATACCCTTGACTAGACAGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTCAGTGTGCTATCTAGGTTGGTCATAACTTTTCTTCCAAGGAGTAAGCGTCTTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGAGCCCCCCAAAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCGTGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTGTTTCACTCTCCACTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTATCATCTGCATATCTGAGGTTATTGATATTTCTCCTGGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCGTTTCTCATGATGTACTCTGCATAGAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTGTAACTGTTGCTTCCTGACCTGCATATAGGTTTCTCAAGAGGCAAGTCAGGTGGTCTGGTATTCCCATCTCTTGAAGAATTTTCCACAGTTTAATCTGATTCACGCAGTCAAAGGCTTTGGCATATAAAGCAGAAATAGAGGTTTTTCTGGAACTCTTCCTTTTTCCATGATCCAGCAGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCTGGAAGTTCACGGTTCATGTATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTACTAGCGTGTGAGATGAGTGCAGTTATGCGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGGGATTGGAGTGAACACTGACCTTTTCCAGTCTTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAGCTCCACTGGAATTCCATCACCTCCACTAGCTTTGTTCGTAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTAATTAACACCTACTGAATGGAATGTGGAGTGTTAGTTGTTGGGTTGCTGGGTAATGAGCTGAGGTTTAAAAACAGACCACAGGAGAAGTTGCAATAGATTTATTACTCACAGGTCCTGGAGGAGGTACATAGCATACCTTGAGGGGCCACGCAGGAGGTCCATGCAGAGTGCAGACAGAAGCAGGCCCTGGGCCACATATCTCTATCAGGGTCCATGGGTGGAGTGTTTTGACATATCCAGACTAGGGCTGAATTGGGCAGTTTGAATGGAAAGAGCAGGCTTTTGGTAAGTTTCTTGGAGGGTTTTATTTCAAGGTCACGTATAAGGCATACAGGTGCTGGAAGGAAACAGCATTGACAAGAGCGAACATTTGCTGGTGACTCTCTGGGTGCTATATAAGACATTTGCAAGAGTGAGGGGCGAGTGTCAGTTTGAAGTCACAGCAGGCACCTTGCCAAACACAATGGATGTCAGGGCAGCAGTGCCCTGGAGTAGCTTAGCTGAACTCTGATACACAGTAGTATAGAGAGACTGGTAGGGGAAACACACTGGGCGAATCAGTTTTTCATTGGTAAAGTACTGGCTCTTCTTTTTGAAATGTGAGGCAGTTCATTGGAAAGCGTTTTAAAATGCTTAGTTTAATGATAGCAGTCTAATTTTTTCCAG
Seq C2 exon
AGGCAAGAATTAGATGGAAAAATTGCCAGAGTTTCAAAAGAAAGGCAGGAGCTTGCTTCTAAAATTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024822:ENSBTAT00000042924:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(13.3=100)
A:
NA
C2:
PF130861=AAA_11=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development