RnoINT0133889 @ rn6
Intron Retention
Gene
ENSRNOG00000013491 | Setx
Description
senataxin [Source:RGD Symbol;Acc:1565575]
Coordinates
chr3:7713517-7714844:+
Coord C1 exon
chr3:7713517-7713632
Coord A exon
chr3:7713633-7714772
Coord C2 exon
chr3:7714773-7714844
Length
1140 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GATTTGAAAATTGTTTTCAGAGG
3' ss Score
3.66
Exon sequences
Seq C1 exon
AAAAAGACTTGCCTTCTCATATTCAAGAAATGCTTAGAAGAAAAGAAATTCTAGATGCTCAACTTGATGAGCTTTCTCGTCAGCGAGCTCTGTGTCGAGGTGGGCGGGAGATGCAG
Seq A exon
GTAAGAACATTTCCTCACTTGGGCCTTGCAGAAGTGGCTTAGACATGAACTAGTCAATGGGTGCATAGTGCTGCTCTTACCATGTGGTGTGACTCCATAAAATGTAGGAGTTGTTTGGTTAGTGTCAGGGTTAGCAGCCTCTTTTGTAAATACTGTGTGTTTTATAGACCATAGTCTGTTGTCTCTGACAGCTTGACTGGGGCTCGAAAGCCTCATCAGATCAGTGTAAACAGCTGCAATTGTATTGCAGTAAAGATTTATTTATAAAAGGAGATGGCATATTTCATTTATTAGGCACTTTTCTGTTATTAAACCCATTTTAGGGACTGGAGAGATGGCTCAGTGGTTAAAAGCACTGGCTGCTCTTCCAGGGGACCCAGGTTTGGTTCCTAACCTCCACATGGCAACTCACAATTAACTACAGTTCCAAGGAGCTGATGTTGTCTTCTGGTTTTCTCAGACTCTGGGCCCACACGTGATAGACACAATGCAAACAAAACACATGTACACAGCAATAATAGTAACCAATATTTCTGATTAGGTTGAGACAAGAGAATTTACTGGCTCATAGACGCAGCCAAGAGTGACTTAGCTTTCAGTATGTTTAGATCAAGAAACTTAGCTGGTAACGTTTTGCCACCTTTTGGTTTCCTTTTCTTTATATCTCAGCCTCTTTTTTTTTTTTTTTTCCCCATGAAAAGTCAAGTGCCAGTGTTTCTGGGCACCACCACTCTGGCTGTGCCTGACACCCTGTGTCTGTTCAAAGGATACATTCTGATTAGTTTCTGTTGCTAAGCAGATCTGATCCCTGGTTTTCTTTAGGGGAAGGGTGCCATGATTTCCCGTGTCTTCATTATGTTGCACGCTCATCCCTGTGTCAGGATTGCTGTGTGTGAACACCTTAGCTGTGATGGAAGAATGAAGCCGAGATCTAGGAAGCTTTGAGAACCTAGGCAGACAGCAAGCAGGGCACATGGGAGACATAGTTTAGCCCATCGGGTGTCTAGAGCAGTGTTGGGACTTGACCAGACTTGATTCCACACTGTTTCAGTGAATTTCATGGGTAAGATGTTTTTTATTCTAAATCTGAGAGCTTTCTAAAGTGCTTGGTTTTCATGGTGATTTGAAAATTGTTTTCAG
Seq C2 exon
AGGCAAGAATTAGATGAACACATTGTCATAGTTTCAAAAGAAAGGCAAGAACTTGCTTCAAAAATTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013491:ENSRNOT00000017984:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(13.3=100)
A:
NA
C2:
PF130861=AAA_11=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]