GgaINT0124335 @ galGal4
Intron Retention
Gene
ENSGALG00000003661 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr17:6499100-6499433:-
Coord C1 exon
chr17:6499417-6499433
Coord A exon
chr17:6499172-6499416
Coord C2 exon
chr17:6499100-6499171
Length
245 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
3' ss Seq
TTCCTTTTTTCCTCATGTAGAGT
3' ss Score
8.73
Exon sequences
Seq C1 exon
GTTACAGATTTCTAAGG
Seq A exon
GTAAACCATTTTTCTATTTGCACAGAAATGTGAGAATGCAGTATCATGTGTTTCAAAGTGTGAATATGTTGACAGTTTTCTGAGAAACTGATCAACTTCTTCAGACGTATTTGATATTTAGAGACAGTCTGGACCAGTCTAAATGATAAATGAATTATAGTACGTGAGGAAGAAAGATAAGTACAACGTGTGCTGTTAATTATTCCTGATATTTATGTGGATTCTTTCCTTTTTTCCTCATGTAG
Seq C2 exon
AGTCAAATGCTAGATGATGAAATTGGCAGGCTTTCAAAGGAGAGACAGCAACTTGCTTCTCAACTAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661:ENSGALT00000005801:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(1.8=100)
A:
NA
C2:
PF130861=AAA_11=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]