BtaINT0132520 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016813 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr17:6677396-6680664:+
Coord C1 exon
chr17:6677396-6677448
Coord A exon
chr17:6677449-6680477
Coord C2 exon
chr17:6680478-6680664
Length
3029 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
ACCAAACTGATTTGTAACAGGAG
3' ss Score
5.4
Exon sequences
Seq C1 exon
GCACAAAGGTACCACCAAAGACCAAAAAAGAAGATTCTGGTGCAAATTCTCAG
Seq A exon
GTAGGCTGCTTGAATAGATAACTGTGGTGAAAGCCAAGTTTTATCTCTGGGAGGACTATTAAAATCATAATTATCAAAAGCAGTGTTTAATTTTTTAATTCGTGTAGCAGATATTTGAGGTAAATAGGTGATCAATGCCTTTCTTGCTCATAGAGCTCATCATACAAATGAATTAGAAAAACATACAAACACTGATAAAAATTAATGAGGAAAGAGACATTATTGGGATATTCATGAAAGAGATAGTATAAGTGGCTGATAGTAAAAAGGTTTGTTTTGGGGTTTTTTTGGCCGCGCACCTTGGTTCCCTGTCCAGGTCTCAAACCCATGCTCCCTGTGTTGGGAGCACAGAGTTTTAACCACTGGACCATCGGGAAGTCCCTAAGAAAGTCATTTAACCTTACAGTAATCAAAGAAAGGCCTTGTAAGGAGACAGTAAAATACCATTTAACATATCTAGTTAACCAAAGATTCAGTACAACAACAGCAAACAAGTAATTACAGGTAAGTGATTGTTAAAAGAGGAAAAGTACAGATTATTGTTATTGTTTTTATCTCTCACCCTAAAGATGAAAAATGAGACAAGGTTTTAGTCACAAAGATGGTCATAGTGGCGTTATTATAATGTGAAAAAACTGGAAATAACCTGAATATAGCCATTATTGGGAAAATGTTCTGAGGCCATGAAAAACTAGATTTGTAAAGTAAATGTCATGGGAGGAAAACATATAGTGAAACTGAATATACAGCATAAAAAGACTAGCAGGAAATGTATTTAAGTTGTTAACATTCAGTTTCCTTAGGTGGTTAACATTATAGATCAGATCAGTCGCTCAGTCGTGTCCGATTCTTCTCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTGAGACTCACGTCCATTGAGTCGGTGATGCCATCTAGCCGTCTCATCCTCTGCTGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTGGGTATATTTCCCATTCTTCATACATTTCTGAACTGGCCAAATGTTCAGGAACATTTGTATTATTTTTATAGTGGGAGAGAGAAAAAATGTAGTAAAATTTTTAGTGTTTAGCATGACTTCCAAAGTTCAAACTGGACAGGAGTGTGAGTGACTTCCATCGTTTTTTGTGACAGGTTTTAGGAGACGAGCCCGACAGGGTCGTTGTTTGTCACAATGTCAGGGGTCACTGGGCTGTGTGTCTCAGTTCTTTCATCCCCCCACTGATCGTTAAACAGGAAAGAAAGTGACCACAGTTCTTCGAAAGGAAACGTCCTCATGGTGGCCACTGTTGCCCAGGAGTGACAAGGACTCTTCTGTAGAGTTGGTTTCTCAAGTGCGGGAACAAGAGGAGAGGGTTAGGCTTTTTGTTTGCTTAGTGGTTGTTTCTCTTTGAAGCCATCAACTGCTGAGCACTTAAGGTGTGCCAGGCCCTGTGCTGAGCAGTCTACATGCAACACCTCGTTTGACCCCACGTGAGCCCTAAGATGAAGCTAAGACTTAGCGTAGTGAAACGCCTTGCCCTGTGTTAACTGGGAGTGACAGAACTGGTCTGGAACCCAGGCCCATCTGGCTCTAAGCTTTTGATCTTAGTGTAATCTTTGCCTCCCTGCTTGAGCTTCTTGAACACAGGGCTCCCATCCGAGTTCGCAGAGACTCCTTGTCACAGAGCAGAACCCTCTTATGATGTGTTTGCAGCAAAAAGCATTCTTGTTGGAGCATGAACCATCACGCCAGGTGGTTACCCTGCCAGCCTTGAAGCGAACTGTGACTTGAAAAATTAGAAGTGTGGACTGATGGAGACTTGGGCCATGGGGTCCGATAACCTCTCAGCCAGGTGGTGTGCTCACTGTTCAGTCATGTGCACACTCGTGTCCAACTGTTTGCAACTCCATGGGCTGTAGCCCACCAAGCTCCTCTGTCCATGGAATTTTCTAGGCAAGAATACTGAAGTGAGTTGCCATTTCCTCCTCCAGGGATCTTCTTGATCCAGGGATGGAACCTATATCTCCTGCATTGCAGGCAGATCGTTTGTTGCTGAGTCACCAGGTAAAGACCTGGGAATTAACAGACTGCCCATTCTGATCCTTCCTAATTTAGGTAAAGAGCTTCACTGAAAATTATATGCTTGGAAATTCCCTGGAAGTCCAGTGGTTAGGATTCTGGGCTTCCAATACCAAGAGCCTGGGTTCAATCCCTGGTCTGGGAATTAAAATCCCACAAGCTTGTAAAGCAATTATCCTTCAATAAAAAATAAATTAATAAAAAAAAAAATCCCACAAGCTGCACTGTGTGGCCAAAAAAAAAGAAAAAAGGAAAATTATATGTTTGCCAGAATGTTTTCTTGTGTCATAAATACTATATACAAATATGATAAGCTGTTATCTAATTTTTTAATGTAAGTAATGTCATAGATCATGAGCTTCCCAGTTGGTGCTAGTGGTAAAGAGCCCACCTGCCAATGCAGAAGACATTGCAGGAGACACAGGTTCAGTCCCTGGGTTGGGAAGATCCCCTGAAGGAGGGCCTGGCAACCCACTCCAGTATTCTTACCTGGAGAATCCCATGTACAGAGGAGCCTGGCAGGCTACAGTCCATGGAGTTGCAGAGAGTCGGACATGTCTGAAGTGACTTAGCACACACAATGTCATAGACTGTAATTAGAAAGAAACTTTTACTTAAGCATTATATATCCCTTAAAAGCAAAAGTCACAAATTTTATCACATGTCATTTAGAATTTTAAGAAAAAGTTACTGGGAGCTTTAATTTCTGAAACTCACTAGTGACGTTAGGTATTGAGTGATTTAAAGTGGCCCTCAGACTTTGAAATGTTATGACCCCTTAGTTTTTTTGCCACCACTTTTTAAGCTTTGTGAAAATTAATCTGAAATAAAATTTCACGTTTCTTACCAAACTGATTTGTAACAG
Seq C2 exon
GAGAACAATCTTTGTGGAGAATGGTGCGAAGCTCTGCACAGTTTCATGGCAGAGACCAGTGAAGACCTATCCTTCAAGAGGGGAGACCGGATCCTGATCCTGGAGCGAGTGGACTCCGACTGGTACAAAGGCAGACTGCGGGACCGAGAGGGCATCTTCCCTGCCGTCTTTGTGCGGCCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016813:ENSBTAT00000022368:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=WD(100=73.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development