GgaINT0073749 @ galGal3
Intron Retention
Description
NA
Coordinates
chr4:34378732-34379464:-
Coord C1 exon
chr4:34379415-34379464
Coord A exon
chr4:34378919-34379414
Coord C2 exon
chr4:34378732-34378918
Length
496 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTCTTCTTTCACTTGAATAGGAC
3' ss Score
9.07
Exon sequences
Seq C1 exon
GTACAGGAGGAGCACTGAAGAAAAAAGTGGAGGTTTCTTCTCCCCTTCAG
Seq A exon
GTAATAGAAGTTCATGGAGGGAGGGGCAGAAATTACATAGAGGTTTCATAGCTTAGCACAGTCTTTCTATTACAATCTCAGATTAGCTGCACAACTCTAAATGTAGTACAGTTCCCACAGTACATAATGGTGTGTGGGAACATCTGTAAGTCTTACAGTTGCTCTACCTAGATTGATTTCACTGCTTTTGGCAAACTAATGTATATTAATTCTTAAACCTTTCTGCTTAAGGAAATTCTTATTGGGTGTATTTGAAGTATTGTGAAATGGTCCAACCCTAGGCTCTGCCATCAATGATAAGAAGGAATGCTTGTGAACTCAGATAAAATTATACAACAAATGCTTTGAAATGTTTTTTTGGTTTGTATCTGCAATAACAGTACTGTATAAGAGAAAATCAGGATGTGCAAATCTTGTACTCTTGCTTTGACCAACATCCATGGGCTTATTGCTATTCCCTTTTAGAATAAATGTGTTTCTTCTTTCACTTGAATAG
Seq C2 exon
GACAACCGATGCTCAGTAGAGTGGTGTGAGGCACTTCATGATTTTACAGCAGAAACCAAAGATGACTTATCCTTTAGAAAGGGAGACTACATCCAAATATTGGAACAAGTAGACTCTGAATGGTACAGAGGAAGACTGAATGAAAAGGAAGGGATTTTCCCAGCAGTTTTTGTTCAGACCCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081:ENSGALT00000016385:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=WD(100=73.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGGAGCACTGAAGAAA
R:
GCGGGTCTGAACAAAAACTGC
Band lengths:
231-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]