HsaINT0149321 @ hg38
Intron Retention
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:151128170-151132383:-
Coord C1 exon
chr4:151132331-151132383
Coord A exon
chr4:151128357-151132330
Coord C2 exon
chr4:151128170-151128356
Length
3974 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CACCTCTAATTTGATAACAGGTT
3' ss Score
4.68
Exon sequences
Seq C1 exon
GCACAAAGGTACCACTGAAAACCAAAAAAGAAGATTCTGGCTCAAACTCTCAG
Seq A exon
GTAGGCTGCTTGAACAGATGACTATAGTGACAGCCAGGTTCAGACTCTGGGAGGAATATTAAAATCATAATTTTCAAGAGAATATAGTATGAATTAATTTTTCAATTCATACAACAAATGTTTGTAATAAATTCTTAGATGGTTAATATATTTTATATAGAGAGCTCATACAAAAACATGTAAACCCTGATAGAAAATGAAAACAGAGACTGGGCAGAGTGGCTCATGCCTGTAATCCCAACACTTTGGGAAGCCAAGGCAGGTGGATTACCTGAGGTTAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAACCAGGCATGGTGGCGTGCACCTGTAGTCCCAGCTACTTGGAAGGCTGAAGCAGGAAAATAGCTTGAACCTGGCGGTGGAGGTTGCAGTGAGCCAAGATAGCACCACTGCATTCCAGCCTGGGTGGCAGTGCGAGACTCTATCTCAAAAAAGAAAGAAAGAAAATGATAAAAGAGACATGATTAGAGAATTCATAAAAGAGGCTGTGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGCGGATCATGAGGTCAGGGGATCGAGACCACCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATCAGCCGGGTGTGGTGACCAGCGCGCGTATTCCCAGCTACTCAGGAGGCTGAGGCAGGGGAATGGCGTGAACCCGGGGGGCAGAGTTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCCGCCTGGGAGACAGAGCAAGACTCTGCCTCAAAAAAAAAGAAAAAAAGAAAAAAAGAATTCATAAAAGAGATACCATAAGTGGCTAATATTGAAAAAATATTTAACCTTTCTAATAATCAAGAAAATATATAATAAAGCAGCAATAAAATACCATTTAACCTATTCAGTTAACAAAGATTCAGTGCAGCTCAGCACTAAACAAGCAATTATAAGCATGTGAGTGTTAAAAAAAAAAGAGAGAAAGTACACATTCTTATTTGTCACCCTAAGAAAAGGATAAAAAATGAGATAGGGTTTTAGTCACAAAGATGAGCATAGTGCTAATATAATAAGAAAAAATTGGAAACAACCTAAATATGACCATTATTGGGAGAATATTCTAAAGCTATGAAAAACTAGATTTATCAAATAAAATAATGTTTTTAAATGTCATGAGAGGAAACATAGGGAAAGGGGATATAAAATTGAATATATAGCATAAAAAGACTGGAAGGAAATTATTCAAGTTACTAGTATTAAATTGCATCTAGGTAGTGAGATTATATATACGGGTAGGTTTTTTTCCCCCACTTCTTTTTTTTTTTTCTTTTTTTTGAGACGGAGTCTTACTCCGTCGCCCAGGCTGGAGTGCAGTGGCGCAGTCTTGGCTCACTGCAACCTCTGCTGCCGGCTTCAAGTGATTCTCCTGACTCAACCTCCTGAGTAAGCTGGGTTTACAGGTGCCTGCCACTGTGCTTCGCTAATTTTTGTAGTTTTAGCAGAAACGGGGTTTTACCGTCTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCCACCTCGGCCTCCCTAAGTGCTGGGATTACTGGCATGAGCCACTGCGCCTGGCCTTCTCCATTTCTTTATACGTTTCTCAACTTTCCAAATATTTAGGAACATTTGTTTCATTTGTATAATGAGAAAGAGAAAAATAGTGGGTTAAAATTTTTACACTGTTCAGCATGACCCCAGAAATGCTTAAAGGTACTAGGAATGTGGTGCCTTCTGTTGTTTTTAGTTTTTTGTTGTTTTTGGTTTTATTTTGGTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGGATCTCACTCTGATGCCCAGGCTAAGTGCAGTGTCGAGGTCTCAGCTCACTGCAACCTCTGCTTCCCAGGCTCAAGCAATCCACCTCAGCCTCCTAAGTAGCTGGGATGACAGGCACACACCACCACTCCCAGCTAATTTTTGTATTTTTTGTAGACAGGGTCTCATTTTGTTGCCCAGGCTGGTCTCAAAATCCTGGGCTCAAGCGCTCCACCTGCCTCAGCCTCCCAAGGTACTAGGATTACAGGGGTGATCCACCACATCCGGCCTTCCATTGTTTTTTGTGACAAATTTAGAAGAGTTAAGCCTGATGGGATCATTGTGTTTGTGAAAATGTCACTTGTAATTGGCCTGTGTGTCCCTTAATTCTTTATCCCTACCCACTGATAAAGTGAAACAGGAAGGAAACTGACTACAGTTCTCCAAAAGGAAATGTTCACATGGTTGTTGCCTGCATTTTTGGAGAATGATAAGTTCCATCCTTTAGGGTTGGTTACTCAAGTGCAGGAGCAAGAGGGGGTTAGTGTTGTTTGCTTGCTTTTTGTTTTTGTTTTATAAGCCATCAGTTATTGAGCACTTAAGATGTGCCAGGCACTGGGCTAAATGTTAGACATGCATTGTCTCATTTAATCCTCTTAGTAACCCCAAGATGAAGCTGAGCCTCAGAGAAGAGAAGCGTCTTGCCCAGTGTCACGAAGTTAAGAAGTGGCAGAACTGGGTCTGGAAACCTTGCCTGTGTAGCTCCAAAGCCTTTGTCCCGGCCAGGCGCTGAGGCTCACTCCTGTAATCCCAGCACCTTGGGAGGCCAAGGCAGGTGGATCGCTTCAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGTGTGCACCTGTAGTCCTAGCTAATCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCATTGAGCCAAGATTGCATCATTGCCCTTCAGCCTGGGCAACAGAGCGAGACTCCATCTCGAAAGAAAAAAGCCTTTTCATTATCCTCTACTGCCTTCTTGAGCCTCTTGAACATAGGGTTCCCATCCCAAATTGGCAGAGCTGCCTCTTCACAGAGCAAAACCTTTCTCTAATGTGCCTGGGATAAAAGTGTTCTTACACTAGCCCACCACATCTGGGTGTTATCCTGCCAATCTTAGAGTTAACTACAGCTCATAAAATTAAAAGTGTGAATTGATGAAGTTCTGTGCTATGGACTCTAATTGTCTCTGAATCAAGTAAAGACCTGGGAATTCATAGACCAACCCATTCTGATCCTTCCTAATTTAAATAAAGAAGAGCTTCACTGATAATTACATACTTTATCAGAATTTTTTCATAGTGTCAAATACTATGCATAAATATTTTATGCTTTTACCTAATTCTTTAATATAACAATATAATAGGTCATATTAAGAAAAAAGTTTTTTGGCTGAGTGAGGTGGATCATGCCTGTAATCCCAGAAGTTTGGGAGGGTGGGAGGATCACTTGAGCCAAGAGTTCAAGACCAGCCTGGGCAACATAGTGAGACTTCATTTCTGCAAAAATAAAATAAAATTAAATAGCCGAGTGTGGTGGCTGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGAGGGAGGATTGCCTGAGCCCAGGAAGTCAAGGCTGCAGTGAGCTATGATTCTGCCACTGTACTCCATCCTGGGTTACTAAGTAAGAACTTGGCTCAGAAAAGAAAATAAAGAAAGTAAAAAAGTGTTTGCTTAAGCTTTGTATATCCCTTAAAAGCAGAAAAGCCACAAATTCTATCACACTTGTCATTTAGAGTTATAATTTAAGAAAAAATTATTGGAAACTTTTACTTCTGAAACTTGATAGCAACATAAAGTATTAGATAATTTAAAGAAGCCTTCAGGCTTTGAAATCTTAAGACCCCTTAGTTTTTTTTTCCCCACTACTTTTTAAGCTTTGTAGAACTCAATTTCAAATAAAATCTTACACTTCTGACCACACCTCTAATTTGATAACAG
Seq C2 exon
GTTAACAGTCTTCCGGCAGAATGGTGTGAAGCTCTTCACAGTTTTACAGCAGAGACCAGTGATGACTTATCATTCAAGAGGGGAGACCGGATCCAGATTCTGGAACGTCTGGATTCTGACTGGTGCAGGGGCAGACTGCAGGACAGGGAGGGGATCTTCCCAGCAGTGTTTGTGAGGCCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686:ENST00000409598:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=WD(100=73.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains