RnoINT0134661 @ rn6
Intron Retention
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185423284-185425503:+
Coord C1 exon
chr2:185423284-185423336
Coord A exon
chr2:185423337-185425316
Coord C2 exon
chr2:185425317-185425503
Length
1980 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
AGATCCCTGCCTTGAAACAGGAT
3' ss Score
5.25
Exon sequences
Seq C1 exon
GCACAAAGGTGCCACCAAAGACCAAAAATGAAGACCCTGGCTCAAATTCTCAG
Seq A exon
GTAGGAGGCTTGAATGGATAACCTTTGTGACAGCCACATTTAAACCCTGGAAGAATTGATACTATAATTACAAGGAGGAAACAGTGTGAAGTCACTGTATGTGTTATACAGCAGTATATGCAGTATATTGCATATGCAGTTATATGCAGTAGATTGTGTGGTGACTGTAATACTGTACCTAAGACTCACAGAAAGACATGCAGAAGGTACAGGGACAGACACCTCCCCTCCTCTTCTTCCTCCATTTCTGTTCTCGTGTCACAGGTGGCCATTCCATGACTCTCCTTTGTGGAAAGGGCTGCTAAGTTAGAGTCTTGTGTAGCCTTGAACTCCTTGTCATCCTGCCTCTAACTCCCAAGTGCTGATGTTGTAAGTATGCATTACCATACCTAGTTTCTTGGCTGACCTCAAATATATGACCATCCCCCTGCCTCAGCTTCCTAAGTGCTTAGATTACAGGTGGGAGCCACCAGGTCTAGTGGGTAAAGGGTTATTTTTCTTGCTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTAGTCCACCAGTTACTGAGAAGGGAAGGCACGCCAGCCACTGTGGAACAGGTCCTCTGTGTCCTGTCATTTGACTCTCACAGAAACCTGTAAATGAAACCAAATCCCAGAGAAGCCTAGTGACACACATAGCCAGGAAATGGTAGTGCCAGGTCTGCCCTGCGTGACTGCAAAGCCTTTGCTACTCGAGATTCTGACCATCCATCTTGGAAGAGCTGCCCCTTCACAGGGCAGAACCATCTTCTCATGCAGTGGAGGGGTTAAAGATATGGTTTTGCTCTGTAGACAGATGAGCCTCAAACTCTAGTTAGGTGGGCCACCTCTGCCTCCCAAGGACAGGGATTTAAAGGCATGTGCCACTAAGACTGGTGGATAAGTGTTTTTTTTTTTAATTTTTTTATGTATATGGGTGTTTTATTGAATGTACTTTGTGCATCTTGGACATGAAGTGCCATGGAAGGCCAGAAGAGGGCATGAAATCCCCTGAAATTGGTGGACAGAGGACAGAGGACTCTGAGTGGTCACTCTGTAGGTGCTGGGAATCAAATCCAGGTCTTCCAGAAGAGCAGCCAGTGTTCTGAACTACTGAGCCACCTCTCCAGCCCATATGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCACATCTGTGTTTCCAGCCCCACAGAAAATGTTCCTAATGGAGAGTTAGAAGTAGCCTATCATATTAGAATAGATCACAGAAAGTTTCTGCTTAAGTATTACATGTCCCTTAAAACTAGCAAAACCCTAAACTGTCACACTTGCCACTTAAAATTATACTTTAAGAAAAGTTATTGGAAACTTATTTCTTTAATTTAATAGTAACATAAAATATTAGGTAATTTGAACAAAACTTCTGGTTTTGAACTTTTTTTTTAAGGTTTATTTATTTTATTTATATGAGTACACTGTAGCTGTCTTCAAACACACCAGAAGAGGGCATTGGATTCCATTATAGACGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCGGGAACTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGGTTTTGAACTCTTAAAAACACCTTCACATTTTTTTATATTTACATGTATATGTTTACATAGGCATGTGAATGCCCTCTGAGGCCAGAAAGGTGTTATATCCCCATGAGTTGGAGTTACAGGCGCTTGTGAGCTGCTGACATGAGTCCTTGGGAACTGAAGTCTGGTTCTCTGGAAGAGCAGCATGTGCTCTTAAACACTGAGCCATCCCACCAGCCCCTGTGGCCCCTTAGCTTTTATTCCTCACCATGTTGGAAGCTGTGAGAAATGCTACTGGGGATAAACCCTCCTGTTCCTCACCCAGATCCCTGCCTTGAAACAG
Seq C2 exon
GATAGCAGCCCTCCTGGAGAATGGTGCAGAGCCCTCCACAGTTTCACAGCAGAGACCAGCGAGGACTTAGCCTTCAAACGTGGAGATCGGATCCTGATCCTCGAGCGTCTAGACTCTGACTGGTACCGGGGCCGGCTGCATGGCAAGGAGGGCATCTTCCCAGCAGTGTTTGTACAGCCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752:ENSRNOT00000015802:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=WD(100=73.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGGTGCCACCAAAGACC
R:
CTGGGCAGGGCTGTACAAAC
Band lengths:
238-2218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]