BtaINT0132522 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016813 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr17:6681073-6684756:+
Coord C1 exon
chr17:6681073-6681170
Coord A exon
chr17:6681171-6684494
Coord C2 exon
chr17:6684495-6684756
Length
3324 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
CAATTCCTGTTTTTCTATAGGCT
3' ss Score
8.79
Exon sequences
Seq C1 exon
CTGAGGCAAAAGGTGTGGCTGCTTTATCACTGAAGGGGAGGAAGGCCAAAGCCTTGTATGATTTCCATGGGGAGAATGAAGATGAGCTTTCCTTCAAG
Seq A exon
GTCAGAATGTGTATCTCTTTTGTAACTGCATTAAGCAGCTGTAAATTTTGAAATGTTTTCAGGGTGAACACTTGCATGGAGTATTGATCACTGATCAAGAATGAACAGATCTCAGACCCTCATTCTTAAGGATGAGATTAGAAAAGTGATTAGGGCAAATGTATATTATCAGCAGATCATTTAAGTACTTTAAAGTCTTATTGATATTGCTAGACCCACAGTTGCCTAACAAATTCCTTATTCCTCAGCCTTATGACATGCGATCTCACTAATGCTGGAGGTTTCACTGGAAGCCCTAGTAAAGGACAGTCCTCAGACTTCCCTGGTGGTCTCCAAGTTAAGATTCTGTGCTTCCACTCCAGGGAACACATGCTTGATCCCTGGTTCAGGAATTAAGATCCCATGATGCCACGCGGCTCAGCCAAAGTAAAGAAGGGATGATCCCCTGCAGGGCCCTTGCAGCCTGCTGCTGTCGCGTCGTGAAACCAGTGGGGAAGCCAGGTGGCCCCTGCTACAGCTGGCCTCTGCAGCAGTGCCTCACAAGGCCCTGGAGTCTTGTCCACAGAGATACTGAATAGACTTTGGGTAGTGACCCCAAAAGATTAAGGTACTTTGAGGAGGGTTTTTTAAGAAGCCTAAAGCCTAACCTTAATCTTAAACAGAATACTTGCATGATCCTGTTTCCACATCCACAGGTGGATTGTGCTCAGAGGAGCGTACCCAGGGCAGTACTGTGGTATTGGGCCAGATGCTGTCAGAAGAGTTGTCAGGCAGTGGGAAATTCTCCATCATTGGAGATACTCAGGGAATTAGAGTATCCAGGAGTGACTGGACAAGATGAGACTTAAGACAGTGGGTACCCACATAAGGTTTACACCTGTATACAACAAAATGAGGAAAACAGCGATGGCTGGGGATGTGGAGGCTTTAGGGGAGTCATGGAGAAAGGTGGCATGCTGAGATATGTCAGTATAAGGTTGCTAACTTTTCTGTTTTGTGATGGAGTTTACTTTCTTCTGAGAATTTCTTTTTCATATTAAAATGTCATTTCCATTATAAAATATTACTAGTAAATGATACATATTTCTTACACAAAATTATAATTGGTAACCCTATATGTTTCTTTCTCTCTTTTTAATTTCTTGGTCCATAAAATCCAAATGTTTAGAAACTGTTGCCCTAGTCCTTTTCAATCTTGAGAGTCAATGGCTCAAAATTAATTCCTTTTATCCTCAAGTATAATGTTACTGTGAGTGAACCCTCTGGATTCAGACTTCAGTTTTGGCCTTCATTTAGGTTATGTCAGTATAATCATCCAGAAAATAGGTTGTCTTCAGGCATTTTTACAAATGCCTGACTGTAAGCGAGATAGTTCTAGAGTCTTTTAGTTAAGGGATGCCGTACCATTTTAAGTATTGTTGATCATTAATATTTTATTCAATATCCACAGAATATTAGTAAATAAAACTTTTTTAAAATTGTCCTAGCTCTCAGAAAACAGATGTGGCATATATGTATGTATGAATCAGAGCTAAGAAAAACAGTTTTACAATACAGTATACTAACGCATATATATGGAATTTAGAAAGATGGTAACAATAACCCTGTATACGAGACAGCAAAAGAGACACTGATGTATAGAATAGTCTTTTGGACTCTGTGGGAGAGGGAGAGGGTGGGATGATTTGGGAGAATGGCATTGAAATACGTATAATATCATATATGGAACGAGTCGCCAGTCCAGGTTCGATGCACGATACTGGATGCTTGGGGCTGGTGCACTGGGACGACCCAGAGGGAGGGTATGGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGGGAACACATGTATACCTCTGGCGGATTCATTTCGAAATTTGGCAAAACCAATACAATTATGTAAAGTTTAAAAATAAAATAAAATTAAAAAAAAATAAGCACAAAAAAAAAAAAAGGAAAATAGTTTTAGTCAAGGATTATAATTTAGGAACCAGAAGGAACTTATAACAGAAACTTTAAATGCCAAAATTTTTACATATTTTAGCAGAGTAAACTAAATTAATGACATTAGATTGTCAACATTTTCCATTAAGAATGGCCTTAAATCAAACCAGTTTTCCAAAGGGCAGTGTCCTAGGGCTACAAATAAATCCATTTAACCTGATAAAGATATCCTTAAAAGTAGCCAGGGTATTCTTGGACCATTACAGAATCTTAAACTCAGGTTCCAGGAAATGGCTAGAAACCGTAAAGAACAAAATAGTTTCAGGAGATAATTTCAAAACTTATGTCTTCATCTGTTGAGATAGTATAATTCATACAGGAGTAAGACACCTAGCCCTTTGACTAGCCCAGGGAAGCCAATCGCGTGCTGAGTCAGGGACAGGGAGGATGCAGTGTGATATTAAGGCCGTGGAGGAGTGGACTGCGCCAAACGGTAGAGGAGAATGCCATTATGTGGAAGAACAGATGTAGAGCACAAAATGCTCAGGAGGCTGAGAAAAGGCCATTTTAGTAAAAACCTGTCTAAGTAGAAAGGTAGACTGTATAATGTGGTGACCGCATGCCTAATGGTTAACATTAGGTTATCCATTATGATTCCTGGATAGGCCCTGGAATCACTCTAGATATGAATCCTCTTCCTACCACTCACCGACACGCAGCACTGAGCAAGTCACGTAATCCCTCGGAGTTTCAGTTTCCTTTTCTATAAAATAAGGAAATCTATAAAAATATTTCTCAAAAATGGGGAAACAATAGTACCACTTCTAGGACTGCAGTATTGTTTAAATGAGTTAATTTTCACTATTCTTAGTTTGATAACAAATAAAAATAAAATAAATGAGTGAGTTCCCATAAAGCACACAGAAAAGGACGAGGCACACACACAGTGAGCATACAGCCCCTCTCGCCAGCAAGTCTCTGCGCGTCGCCCGGGATGAGGCCTCCCCAGACTGCCGATGCGGTGGCAGCTCACACTTTCTGCCCGCCTCTGCTGGCTGTTATTCGTCTCCCACCTCTGGAATAAGGTCTTTCTTCATTGCTGTATCCATAGTGCCCAGAAGTATCTGACACGTAGTGGGTGTCTGATAAATAATTGTTATTTGGGGAAAAAATTTCTCTATATATACTATGGTAGCTGGTATTTTTATTTATTAAATAATTTTAGATTAGGAGTGGTGAATTTGAGGGGCACAAAATACAACCTGGAAATGCAACAAAGTTGACAGTGACAGAGGAATGGGGTTTGAGGAAAAGAAGCAGCTTAACATGTGTACACTCAGCAGAAACTTAATAATTAGTTTCAATTCCTGTTTTTCTATAG
Seq C2 exon
GCTGGAGACATAATAACAGAGCTGGAATCTGTCGATGATGACTGGATGAGTGGAGAACTGATGGGAAAATCTGGAATATTTCCCAAAACGTACATTCAGTTTTTACAAGTTAGCTAAAGGTGATGCTTGACTGTGCTCCTTGGCACAGAAACTCACTTGAACTCTCACTTTGACTATCAGATATGTTTTTGCACTATTTTTTTAAACGGAAAGAAATATTGATGCTGTATACGGTATACTAGAATTTTCTGAAAGCAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016813:ENSBTAT00000022368:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(34.8=48.5)
A:
NA
C2:
PF0001823=SH3_1=PD(60.9=71.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development