MmuINT0143076 @ mm10
Intron Retention
Gene
ENSMUSG00000028082 | Sh3d19
Description
SH3 domain protein D19 [Source:MGI Symbol;Acc:MGI:1350923]
Coordinates
chr3:86123686-86130526:+
Coord C1 exon
chr3:86123686-86123783
Coord A exon
chr3:86123784-86126594
Coord C2 exon
chr3:86126595-86130526
Length
2811 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TAACTCCTGTCTTCTTCCAGGCT
3' ss Score
10.23
Exon sequences
Seq C1 exon
CTGAGGCAAAAGGTGTGGCTTCCGCAATACCGAAGGGGAGGAAGGTTAAAGCCCTGTATGATTTTCTTGGGGAGAACGAAGATGAGCTCTCTTTCAAG
Seq A exon
GTCAGAATACATATCTTTATATACCTCAGCAAAACTACCTTGAGCTTCTAGTGAGGATTTATCAAAAAGAAAGTGGGGGGGGGGGAGCATTTGGGGAGGAAGAACTAAATAAACTGAATAAGGTCTGATAGTTTACGTCATCAACTGTCCTTTAGGAACCTAGGGGAACTTAGTAATCCCAATCTTCAAAGAATTCCTTGTGTCTTGGCTTCATAGTAGCAGATCTTGATGTGGGGGTTTTCGTTAGCAGTGTTCTCTACAGCCTCACAGCCTGCTACCAACATCTGAAATTAATGGAGAAATCAGATAGTACATGCTACATATTTTGGCTTTGATTTGTGTCGATTCGCAGAATTCACAGCATACCGCACAGAGAACAGGCTGTCTTCAGGAATGACTGGCTCATAAGTCAAATGGTTGAGCTTTTTTGTTAAGGAAATCTACTGCTTTTCTATTGGTCATTAAAGTTTATTAAACAATATTAAATATAAATGTGCACAGTATGTTAGTAGATAGCTATCTTAGATAGTCCTAGCATTCACAAAGCTGACAATGGTTAGAAACATAGCTTCAACTACTCGTTATATTATAACTTATTTGTAACACGTTTTGAATAGCCAGAATTTTACAGATTTAAGCAAGGTATACATAAATGACATCCGATAGTTACCATGCTTTCATTCCAGTCTCCGAAAAGGAAAGGCTTTAATCGAACAATTTTGCAGAGAGCTATATATTAGTGCTACAAAGAAATCCATTTATCCTGGTAAATATACTTTCTTCTTAAAGTAGCCAGTGTCATCTTAGACCTTTGCAGACCTTTAAATCCAGGCTCTAAGAAATTATTAGACACCATCAAAAACAAAATCTGATCCTCATCTGATAAGGGAATCATAGTTTGCTCATGTGAAGACACACTACCACTGTGACTTGGATGATGGTAAACCAGTATTGTATTCTCTGCTGAGGCAAAGCACTCCAATTGATGCTGGTGCTGGTGCTGGTGCTGATGCTGATGCTGGGGAGGGATAGAATAAGCCCATGATAGAGGGAAACACGGTTATATGCAGGAATCTGAGTACAATACGCTCAGACTGTTACAAAGCAGTTTTATAGTAACATTACAGTGTGAACTGTGGAGGCCTCCTCATAGCCTCTTGATTAGGAATGTGGACCTTAGAACACCCTAAAATTTGAATTATGGCTCTACACTAATTATATGTGCAATTCTAGTAAGTTCTGTTATGCTGGCTAGTCTTTGTTTTGTTTGTGATAGTTGTTGTTTTCAAGACAAGGTTTCTCTATATAGCTCTGGATGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAAAGATCTGCCTTCCTCTGCCTCTTAAATACTGAGATTAAAGGCGTGTGCCACTGCCACCTAGCATGCTAGCTATTCTACGTCAATTTGACACAAGCTAGAGTCATCTGAAATCAGGGGACCTCAATTGAGAAAATGCCTCCATAAGATCCACCTGTATAGCATTTTCTTAATCAGTGATTAATGGGGAAGGCCCAGCCCATTGTGGGTGGTGCCACTCCTGGGTTCGTAGTCCTGGGTTCTATAAGAAGCAAGCTGAACAAGCCAGTAAGCAGCACTCCTCCATGGCCTCTGCATCAATGCTCCTGCTTCCAGGTTCCTTGCCCTGCTTGACTTCCTCCCATGATGGACTGTGATCTGGAAGTGTAAGTCCAGTAAACCCTTTCCTCCCCAGCTTGCTTTTTGGTCATGGTGTTTTGGTGCAGCAATAGAAGCCTTAAATAAGACATATATAATGTCTGAGCCTTAGACTCTTTATCTACAAAACAAGGACATTAAGAACCGGGGAGAGAGCTTGGTGGGAGCAGCACCTGCTGCACCATGAGTTCCGGGATTCAGATGCCCAATATTCATGTAAATGCCAGAAGGTCATGGCCATGTGCTGGAGGCAGGACTCCAGAGCAAGCTGGCAACTACACTAGCTGAGCAGTGAGCTCTGGGTTCAAGTAAGAGACCTTTCCTCAGCAGTATAAGATGCAGAATGATGGAGAAGACATTTGGCGTCCAGCTCTGGCTTCCATGTGTACACACAGACACGTGTGCATGCACTTACGCACACACGAGCCCACACACATGCACATCGCACTCAAAAAATATGAAAAGGTCTCTCCCTCACATGAGGATGCTATCGGTGCTCATCTATACAAATGTAGTTTAATTTTTGTGAGGCACGCACGGACTAGGACAGAGCACGCAGGAGCAGGCGGCTCACTCTTCCACCTGTGACCTTTATGTAAGTGTGACTGTGCCCCTCTTAGACGGCCCTCGTGAGTAGCAAAGCCACACTCTCCATCCCTCTCTTGCCTTCCCACCCTAGAGCAACTCCATTACTACATTATAACTATATTACCCAGGACAGCATCTGCCACATAGTAGGTATTCTGTAATCACTTGTTAACTGGAACTGTGTGCATTTGTGTATATATAGCTGATACTGTTATTGATCTAAGAGTGATTTAGATTAGGAACTGTGCTTGTGGGAGCATAAGACATAAGCAGGAAGCTGCAGCAAGGCGGATAGCGGCGGGGGACTGAGTTTACTCGGAGAAAAAGAGGCCTGAAAGCAAATGTCATTAGGTATATCATCTGTGCGGTTTATCATTTAATCCTCTCTGCAAATCAAGATAAACGAGCTATATAAAGACAAGATTATTCACGCCGCTCCAGGTAGGCTACACTCTGTGCTTATACCCTGCAGAAACCAATAATTATTTCTAACTCCTGTCTTCTTCCAG
Seq C2 exon
GCTGGAGACGTAATAACGGAGCTGGAGCCCATAGATGATGCCTGGATGCGTGGAGAACTAATGGGAAGAGCTGGAATGTTTCCCAAAAACTACGTTCAGTTTCTACAAGTCAGCTGAAGGTGACGCTTGCCTGTTGCCTGGCACAAGAACTCACTTGAACACTCACTTTGACTATCAGATATTTGCACTATTTTTTTTGTTTTAACAGAAAGAGAGTATCTAAGATGTACGTGGTACACTAGAATTTCTGAGGGCAGAGAACTTGTAGGTTTTATCGCTTAGCTTCATTCACAGTGGAAAGGTGTACGTAGAACCCGAGAGTGAGGGAGCCGGCAGGGAAGCGCTAGCAGGGATGGCAGGCGATGCAGCTCCCCTGGGAAAGACAGCATCGGGGTGCAGGCAGCAAGGGTTGGCTAACAAGCAGGAACTGGACTCAGACACCTGTTCCCATCGACACACCGAATTAACCATGCTCCTTCATTTTCTACTTTAGTTTAAAAAAGAGGACGTTTGACATTCTACATGCTGTAACTATCAGGACATGGATGGTAATCTGAATTTCGTTTTTGCTATTCAATTAACTCTAACAGCTTGAGCGCATTAGTCTTAGCCCCAGGGCAAATTCTTGCTGCAGGACAGATAGTTTGGTAACTAGTGGAACATTTACAAGCCGGTGGGGAAACAAGCCTGTGTTCCCCCAGGTGCTCCTTGTGTGTCCCAGCGTTCCCCATTTGTCCAGGGAACTGAAGGGGTCAAAAGAACCAAAACCATCCCTGAGATGCCTTGCTAATACAACTAACCCCTCCACAGACATGCCACAACTTACCTCTTCCTCGGTGTATGTATACTTCATGTTAACAGGGTTCTTATAAAGCACATTTTCTGAATCTGCAATCATTCCTTTGACAATTACTGGTACCCAAAGGAAAACTCATTTTCTTTGCATTACCCCAGTAATACATAAAAGCTGTCTCTTGTTATAGTGGTACATTATGAAGCTTGGATAGTATCTTAGATTACAGAGCAAATGGTAAGATGAAGAACAGTACCAAGCCCCCATAGCTCATTTCTCCTCAATATAATCAGATGTTAACATAACTTAAGAGGACTGAAGGCTGGTGCAGTGCCCCCCGTCCCATGCAACACATCTCTGCAGTTAGTGGAGTAAATACAAGGCCACTTTCCTGTCATCCAGGCTCACATGTTCTGAGTTTCAAAAGTGGCTCTTGTGTGACTGAATCAATTACAGTTTACAAACTAAAGCCAAATACTTTGAAGACAATCTAATGGGCCAGTGGGTTAACATTTCACTGGAGATGGAAAGCGCTCTCCAGCAGGGTCCGTGGCTTTCTTCTGTTTTCAAGAAGAGTTCCATATGCTGGACCACTTCTTTGTAGTCTTCCCCGTTATCCAAAACCTGGGCGGCCAGCGGTTTCCTGAACGTGTTGCTTCTATAAGGGAATATTTACTTTGTTTTCTACTAAAGTTCCTATCCTTGGCATATGATTGCACTTGATTTTGGCATTTAGGGTCTGGGGTTTCTATTGTATGTTTTCGGTTAAGAGTATTTAAGGAACATCGTTGTAGGTTCTCACCCATGTTAGTTTTACGAGAATGGGATGACTTGAGTGTTATTCAGACTAAATTCTCATTGGCAGCAAGCCATACAAGAGCAAGAAGGGGGCAGGGGTGTGGAGAGGGGTATGAAGTGTGTCTTTGCCTGTGAGATTTCAACATTTAATAGTGAAGATTCTGAGCAACCTATCTTTATTGAAGAAAAAAAAATCCCTCTTAAACATTGGCTCTCTGTAAGCAGGATAAGTGCGATAGTTGTGTATCTACTTGACACCATAATAAACTGAACTCAGCTTTTCGATTCCTCATCTCAGACTACACTGCATTGTTCAGAATATATGTAGATGGTACCTGTCTTAACCCTGTATCTCCAGTCCTTTGCACGGGTGGGTGGAGTGGTTATTTGCTAGGTGGGTTTGGTAGACAGACGGATGGCTTTCACGGGCCATTGAGTTTACTCAATACCGTTGCTATTTGTTGATGCAGATATATATTGAAACAAATTTCCTTTTCTTTCTTTTTTTTTTTTTTCCATCTCACTCTTCCATGCTGTTTTCTTGCTATGTATTTCTCTCCCAACTACTAGAAAGGAAAGTGTAGCTGTGTGGTTCTCATGGTACTTTCTTATTATATATATTGATTGAGGTCATGGCAGAACTCAACAGTGTTCAAAGAAAAATAATTGTGAAGAAAATTTTATGAGATAAATGGAAATGGGTTATTGTGTTTGTTTCCAAAACTTTTAGGTAAAAGCTTGATATTGTTCATCTTTGTCAGTCAGCTTTTCATCGCTGTGACAAAATTCTTAATTATAAACAACTTAAAGGAGAAAATTTGGGCCTGTTTTCAATCCATGGTCACCTGCCTCCATCACCTTGGGCCTGGTGCAATCACATTGGGGAGTTTTTCACCATATAGAATCTGTGAAAGAGAAAAGAGGCAGAAAAGGAAGAAAAAGTAGAGAACAGGAAGAGAGAGAAAAGAGAGCCAGGCACAAGGCGTACTCCTCAGAGAAACACCTCAAATAGCCTTCCTCTGGCCCCTAATATCCCACTCAGCCACCAGGTCATCCACCGTGGCTTCCACCCATCCAGGATTAGTTCATCTGACCATGACCTGATCCCATCTCAGTAATGCCTGTAGATAGAGGGCAAAACCCTGCATACATGAGTTTTCTGGGGCCACCTTCATACCCAAACCATACACCATACAAACCTCCTGAAATACTCAGGTTTGGGGTTTGCTTTTTGTTTTTAGGTTAAAACTGGAGAAGCCATTTTTAATATATTATCCTTTGAGCCTTCAAAGATAAGGTTTCCTCAGGTGCCTGCAATACATTGCTGTAGGAAGAATGTAATTCTTTCACTGCTCTTGGAATCAGCCTGTGTCATTTAGAAGAGAGAATATTAAGTGTATTTACCAAAATATATCATCAGAACTGGCATTTTAAAAAGATAATTATAGGACTGTAAGTCAGTATCCCTAAAAACCACCATTGTTTGTATTCAGTTTCTTAAATTTAGGTACACGACCCTGAGAATACAGCAATGAATATATGGATCAAGTTAGACTATTTTAGCTTTGGTATGAACATTGTTTCCTTTTAATTAATGTCAGATGCACATAGGCCATAAAATTCATGATTCGATGCCAATTTGAATGTCACTGAATGAATTCAGAAGCTGATTTCTCTTTTCCAGAACTAATGGGAAATCATTGCTACCTTACTTTTTACTTCACTGTGTGGAACAGAATCCATAGCCTCACTCGGAACTCTGCCGCCATCTAGGGGCCTCTCCTTTCATTACAAGCTTTTCTTTTTCTAAAGTGTGGGGCTACAAAGCTCAACAAGGAGCCAAGACTTGTAAGGTCACTGCAGAGCCCTAAAAACAGCCTAGCTCTGCAGACGACCAGTCATTTATTATGCTGAAATGATGTTTCTCGTTAGCTGCTAAAATTGCTCGTGTGGCTGGAGAGACAGACTTTAAGAGCGCATCCTGTTCTTCCAGGGGACCCAGGGTTCAGTTTCTGACACCCATGGCAGACAGCTCACAATTGCCAGCAGCTCTGGCTACAGAGGACTGAAGTCCTCTCCCAGACTGCATGGGCACCTGCATACAGGTGCACACTAACACAAAGATATGAGTAAAATAAAATAAATCTTTAAATGTTTTGGTATTTTCTTAGCCTATAGAAGTTGAAGGCTCACACAACTCATTAGAAAGAATCCCACAGGTATTCCTGTAATCCCAGCACTAAGGAGTCTGATTCCATCTTCTTGCAAAACAAGAAGGGAAGGAGGAAGGGTGGGCAGTGATTGCAAAGAACAAATTAAAGCTCTGAATGTTTTAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028082:ENSMUST00000182666:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(88.9=48.5)
A:
NA
C2:
PF146041=SH3_9=PD(65.3=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types