HsaINT0149323 @ hg38
Intron Retention
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:151120279-151127715:-
Coord C1 exon
chr4:151127618-151127715
Coord A exon
chr4:151122208-151127617
Coord C2 exon
chr4:151120279-151122207
Length
5410 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TAACTCCTTTTGTCTTACAGGCT
3' ss Score
10.08
Exon sequences
Seq C1 exon
CTGAGGCAAAAAGTATGTTGGCCATAGTACCGAAGGGGAGGAAGGCCAAAGCCTTATATGATTTCCGAGGGGAGAATGAAGATGAACTTTCCTTCAAG
Seq A exon
GTCAGAATGTGTATCTCTTCATAACTGCATTAAGCACTATAATTTTTTAAATGTTTTCCATTGAAGGATGGAACATTTGGGTGGAATATTAATCATTACTCAAGAATGAAGAGATCTCAGGCCCTGATTCTAGGGGAAGACATTAGAGAAAGTGAACAGTGCAAATAGGCCTGTTAATTTACAGTATCAACCAGGCATTAATGTACTTAGAGAAAACCTTGGCTTTACACCCCCATACATCCCCAAAGTAATCCCTGTTCCTTGGTCTTAGGTCATCAGATCTCAGTAATATTAGGGTTTTTATTAGTAGCCCTGGTAACAGATGACTGTCTACATGGCCCTGCAAGCCTGCCATTGATGTGTCTTTGAAATTGATGGAGAATCAGATAGCACCTGCTACAATTTGCACTAGTAGCATAGTAGCCTCATAAGACACTAAATTCCTTTGGGAGGCCGAGGTGGGGGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAAATTAGCTGGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTGAGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCACTCTTGTCCACAAAGGCAATGACCAGAGGTTTGGGGAAATAGTCCCAAAAGGTTGAGCTAGTTTGCAAAGGTTTTTTTTTTTTTTTTTTTCACCGAAGAAATGCCTAATTTCTTCTTAAAGTAAAAGTAGATATTTTCTTTTCTTTTTTTTTTTTTTCTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGGGCGATCTCGGCTCACTGCAAGCTCCACCTCCCGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCATGCCCAGCTAATTTTTTTGTATTTTTTTTAGTAGAGACGAGGTTTCACCATGTTAGTGAAGATGGTCTTGATCTCCTGACCTGGTGATCCGCCCACCTCAGCCTCCAAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAAAAGTAGATATTTTCATGATTCTATTTCCCTAATCCACAACTGGACCATAGTCAGAGGAAAGCACTTTGGGAACAGTGCTAGAAGAAGGAGGGTGGTTTTAGTAGTCACTGCTGTCAAAATAGCCTGTGTCAGGCAGTGGTAAATTCTCTGTCATTGAAGATATTCAGTCAGAGGAAAGGATGCCATAGAAAGAATTAACATATCAAGGAATGATTGGACAAGGTGTGGTTTAAAACAGTGGACAACCAAACAGGGTTTTCACTTGTCTGCAACAAGATGAGAAAAAGGCCGAGCAACAGTGGCTCACACCTCTAATCCCAACACTTTTGGGAAGTCAAGGCAGGAGGATCGCTTGAGGCCAGGAGTTTAAAACCAGCCTGGTCAACATGGCAAGACCCCATCTCAACAAAGAAAAAGAGGAAAACAAGGCAATACCTGAATCAGGTATGTGCAGCCTTTGTCGGGGTAAGGGGGGATGCCTTGACTGAAATATGTCACCATAAAGTTGCTAACTTCCTATTTTGTGATGGGGTTTTACTTTATTCTGAATAATAAAATGTTATTTCATCTTTTTGTATTAAATGTCATTTCTGTTATAATATATTGTTAGCAAATAATAGATATTTCTTATTCTTCCTTCCTTTCTTTTTTTTTTTTTTTTTTTTTGTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGATTGCAGTGGCATGATCTCGGTCTGCCTCCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACACACCACCACACCTGACTAATTTTTGTATTTTTAGCAGAGACGGGGTTTCACCATACTGGCCAGGCTGGAATCAAACTCCTGACCTCGTGATCTGCCTGCCTCAGCCTCCAAAAGTGCTGGGGTTACAGGTGTGAGCCACCATGCCCGGCCTCTCTCTCTTTCTTTCTTTCCTTTCTTTCCCTTCTTTCCTTTCCTTCCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTGGTTTTGTTTTGTTTTGTTTTGTTTCTGAGACAGGGTCTCACTCTGTTGCCCAGGCTGAGGTGCAGTGACACAATCTCAGTTCACTGTGCAGCCTCAGCTTCCTGGGCTCAAGCGATTCTCCACCCCTCAGCTCCCTGAGTAGCTGGGACTACAGGTGTGAGCCACCAATGCCTGGCTAATTTTTGGTATTCTTTGTAGAGACTGGGTCTCACCCAGGCTGGTCTCAAACTCATGAGCTCAAGGCGATCCATCCGCCCCAACCTCCCAAAGAGCTGGGTTACAGGCATAAGTCACCACACCCAGCCATAAATGATAGGTATTTCTTATGCTGTAAGCTATGCAAAATTAAAAACTCGTAACCTTCTATCAGTTCCCTTTTTTTCCTTTAACATCTTGGTCTTTAAAACAAAATTTAAAAAAGAAAGAAAGAAAGAAAGAAAACTGTTGCCTTAGTCCTTGAGAGTCAGTGGCTCAAAATGTATCCCGTTTATCTTTACATAAACTTACTGCAAGTGAAGAATCTGAATTCAAACTTCTTGGATGTTATTTTGGTCTTCATTTAAACTATGTGAGTATAAATAACAGAATGCACAGTATCCTCCAGAAAACAGGTTATCTTCATTTCATTTTACAAATGGTTGTCCATAAGATAGTTCTAGAATTGTTAGAATTGTTGTTGTTATTGTTGTTGTTAAGGGATTCTGCACTGCTTTCAGTTTTATTAAATATCCACAGAATGTTAATAGATAAAACTAATTTTTTTTTTTTTAGAGAAGGAGTCTTGTTCTGCTGCCCAGGCTGGAGTGCAGTCAGCGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCTGGATTCCAGCAATTCTCCCGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCATGCCACCATGCCCAGCTAATTTTTTGTATTTTAGTAGAGACAGGGTTTCACTGTGTTGCCGGGCTGGTCTTGAACTCCTGAGCTCAGAAAATCCACCTGCCTTGGCCTCCCAAAGTGTTAGGATTACAGGAGTGAGCCACTGCACCCGGCCAAAACTAATTTTTGAAAATAGCCCTAGCCTGGCTGGGTGCAGTGGCTCACGGCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGAGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTGCTAAAAAATACAAAATTAGCCAGGTGTGGTGGTGCATACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCTCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCTTGCCATTGCACTCCAGCCGGGGCAACAAGAGCAAAACTCCATCTAAAAAAAAAAAATAGTCCTAGCCCTCAGGAAACTGACATGGTATGTAGGTTTGGACCAGACCTAAATAAAATAGCTTCAGTTAACTATTAAATTATAATTTAGGAACCAGAAGGAACTTATTTATAACAAAAACTTTGAATTGCCAGAATTTTTACAGATTTTAGCAGAGCAGAGTAAATTAATAACATCTGATTGCATGTTTCCTTTTCATTTTCCATAAAGAAAAGCCTTAAATCAAGCCATTTTTTTTTCCAGAGGGTAATGTACTAGGGCTACAAATAAATTCATTTAGCCCAATAAAGGTAGTCTTAACAGTAGCCAGAGTCATCTGGGACCATTGTAGCATCTTAAACACAGATTCTAAGAAATGTTTAGAAACTATAAAGAACAAAATAGTTATGTCTTCATCTGCTGAAGGAATTCTAATTTGCACATGAATAAGACACACAGCCCCTTTGACTAACCTGATGAAGATAAAACAGTGTCCTGAGTCAAGGTGAAGCTCTTTAAGATGGGAAAAAAATGCAAATTTGATATTGAGGCCATGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCCACAGAGCGAGACTTTGTCTCAAAAACAAAAGATACTGGGGCCATAGGAGGAATGTGATAAACCAGATGGTAGAGGAGAAATGCCATTATGTGCAAGAATAAATGTAGAGTGCAAAATGCTCTGGGTGTTGATAAAAGGCAATTACAGTAAAAGCCTTTCTAAGTAAAAAGGTCCATTGTAAAATCTGGCGGCCACATAGCCTAGTGGTTAGGAATATAAGCCCAGGAATTGCACTAGATTTGAATCCTGGTTCTACCACTAACTAGACATGCGACACTGGCAAGTTATGTAGTCTATCTGAGTTTTGGTTTCTTTTTCACTAAAATAAGGAAATCTATAAAAATATATCTCAGCCAGGGGCAGTGGCTCACGCCTGTAACCCCAACACTTTGTGAGGCCAAGGTGGGCGGATCACAAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATAGCTGGACGTGGTGGCAGGCACCTGTAACCCCAGCTGCTCGGGAGGCTAAGGCAGGAGAATTGTTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCATTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGTCTCTAAAATGAGGATAACATAGTACTCATCTCTAGGACTTTGGTGGTGTTTACATAAGAGTTAGTTCCTGTGAAGTACACAGAATAAGACAAGGCATACAGGAAGCACATGACTCACTTTCTCATCTCCAAATCTTTGCCTATATGACACCTTCAGTGAGGCCCTCCCTTGATGGCCCTAATGAGTTGGCAATCCCATGCTTTCTGTCCTCTTCTGCCAGTTTATTTGCCTTCCCGTTGTAGAATGAGGGAATATTAATTGTGCTCAGAACAGTGTCTGACACATAGTGGGTACTCAATAAATAATCGTGTGTGTGTGTGTGTGTGTGTGTGTGATAACTGGTATTATTTGTTCAAGAGGGATTTTAGATTAGGAGTGGTGAATTTGAGAGGCACAAAGTATAAGAGGGAAAATCAAAGTGCAGCAAGGGTGGCAGTGGCAAAGGAATGAGATTTAAGGGATAGAGGCTTACAAGCAAATGGCATCATTAGGTATAGATCATTGTTGTCATTTAATTCTCAACAATCAAGATAAATGAGTTATACAGAGAAGATTATTCATGCTGCCCTAGGTAGGCCACTATTTACCATGCTTATTCTCAACAGAAACCAGTAATTCTAACTCCTTTTGTCTTACAG
Seq C2 exon
GCTGGAGATATAATAACAGAGCTGGAATCTGTAGATGATGACTGGATGAGTGGAGAACTTATGGGAAAATCTGGAATATTTCCCAAAAACTACATACAGTTTCTACAGATCAGCTAGAGGAGAAGCTTGTCTGTGTTCCTTGGCACAAGAACTCACTTGAACTATCACCTTGACTATCAGATATGTTTTTGCACTATTTTTTTTAACTGAAAAAGAAATATCTAAGCTGTACATGGTACACTAGAATTTTCTGAAAGCAGAAAACGTTCAGATTTTGTAGTTAATTTTCATTACAATAGAAACATGCACATGGAAACCCATGAGCTAGGATTCTACCGAGGAAAACATCTAGTGGGATTAGCAAGGTGAAGGGAAAGCATCTGGTGGCATGGCAGCATGGGGAGGCTCACACACAGAAGTTGCACGTGGACATCTGTTTTAATCAGCACAAGTGAATTAACCATGCTTCTTCATTTTTTTACTTTAGTTAAAAAAGAGGACATTTAATATTCTACATGCTGTAACTATCAGGACATGGTTAGCAATCTCAATTTCATTTTTGATATTCAAATTAATTCTTACAGCTTGAGCATATCAGCCTTATTACCAGAGCAAATCCTTCCTTCAGATGGGATAGTTTACTGACTAGTTGGAGCATTTGTAAGCACATGGTGAAATCAGCCCCTGCCCACCAAAATAATCTTTATGTTACCAAGTGATTCCCATTTGTCTAAGGATTTGAAGGGGGTCTAAATTGGATGTATCTTACTTAGTCTAAAGAACCAAAACCATCCCTGAAATGCCTTGCTAATACAACTAATCCTTCCATATATGTGCCATACTTATTTTTTTCCTCAGTGTATACTTTATGTTAACAGGGTTATTACAAAGCACATTTTCTGAATCTGCAATCATTCCTTTGACAATTACTGGACCCAAAGGAAAATTCATTTTCTTTGCATTATTCCAGTAATATATAAAAACTGTGTCTTGTTATAGTAGTACATTATGAATCACATATAAAATCTTACAATACAGAACAACTGTTAAGATGGAAAACAGTGCCAAACCTCCACAGCTCATTTCTTTGTAATATAATCAGAATGAAAAATAATTTAAGAGGACAGAAGACTGGTACTTTTTTGTTTTATTTTTTCTCTAGCTTATCCCTGCACAATTATTAGAGTGAATGAAAAACCACTTTCCTGCTTTCCATTGTTATAAATTCTAAGCTTAAGATAAAAGTGGTTCTTTACATGACTGAATCAATTACAATTTATGGGCTAGAGCCAAATAGGTTGAAGACAATCATCCAAACAGATCAATGGAATAGAATTTCATTGGAAATGTAAAACACTTTCCCAACAATGGTCATGACTTTCTTCTGTTTTTGAGAAGAGTTTCATATGCTGGACCACATTTTAGCTTTTATTGTTTTTTTTTTCCCATTGTCCAAAAAGTTAAGCAACAAGTGGCCACACTTTTACGTGACTACAACCTGGAGTTCTGCAAAGAAGGTAATATTTACTTGGTCTTTGACTAAAGTTATCTCCCCATTCTATGGTTACATTTTATTTTGGACTATGGGGACTTCTAATACGTTTTGGTAAAGAAGAGAGTATAAAGAAAATTCTTGTCAAATTTCACTCAAAAGTAATTTCATGAGAAATCAATGATTTAAAGCATTATCCAAATTAAATTATCATTTGCAGCAAACTGTACAACAGCAGGAAGGATATGGAATGGAACATGAGGTATATATCTTTGCCTTTATAATTTTAACATCTTATATTGAAGATTCTGAAAACCTATCTTTATTAGAGGAAAATCTCAATCTTCAGTTTTGGCCTTCTGTCAGCAGAATGATAAGTGCAATAGTTGTAAATCTACTTGACACTGTAATAAACTGAACTGAACTTTCAAAGTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686:ENST00000409598:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(30.6=45.5)
A:
NA
C2:
PF146041=SH3_9=PD(65.3=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains