HsaINT0149323 @ hg19
Intron Retention
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:30418]
Coordinates
chr4:152041433-152048867:-
Coord C1 exon
chr4:152048770-152048867
Coord A exon
chr4:152043360-152048769
Coord C2 exon
chr4:152041433-152043359
Length
5410 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TAACTCCTTTTGTCTTACAGGCT
3' ss Score
10.08
Exon sequences
Seq C1 exon
CTGAGGCAAAAAGTATGTTGGCCATAGTACCGAAGGGGAGGAAGGCCAAAGCCTTATATGATTTCCGAGGGGAGAATGAAGATGAACTTTCCTTCAAG
Seq A exon
GTCAGAATGTGTATCTCTTCATAACTGCATTAAGCACTATAATTTTTTAAATGTTTTCCATTGAAGGATGGAACATTTGGGTGGAATATTAATCATTACTCAAGAATGAAGAGATCTCAGGCCCTGATTCTAGGGGAAGACATTAGAGAAAGTGAACAGTGCAAATAGGCCTGTTAATTTACAGTATCAACCAGGCATTAATGTACTTAGAGAAAACCTTGGCTTTACACCCCCATACATCCCCAAAGTAATCCCTGTTCCTTGGTCTTAGGTCATCAGATCTCAGTAATATTAGGGTTTTTATTAGTAGCCCTGGTAACAGATGACTGTCTACATGGCCCTGCAAGCCTGCCATTGATGTGTCTTTGAAATTGATGGAGAATCAGATAGCACCTGCTACAATTTGCACTAGTAGCATAGTAGCCTCATAAGACACTAAATTCCTTTGGGAGGCCGAGGTGGGGGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAAATTAGCTGGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTGAGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCACTCTTGTCCACAAAGGCAATGACCAGAGGTTTGGGGAAATAGTCCCAAAAGGTTGAGCTAGTTTGCAAAGGTTTTTTTTTTTTTTTTTTTCACCGAAGAAATGCCTAATTTCTTCTTAAAGTAAAAGTAGATATTTTCTTTTCTTTTTTTTTTTTTTCTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGGGCGATCTCGGCTCACTGCAAGCTCCACCTCCCGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCATGCCCAGCTAATTTTTTTGTATTTTTTTTAGTAGAGACGAGGTTTCACCATGTTAGTGAAGATGGTCTTGATCTCCTGACCTGGTGATCCGCCCACCTCAGCCTCCAAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAAAAGTAGATATTTTCATGATTCTATTTCCCTAATCCACAACTGGACCATAGTCAGAGGAAAGCACTTTGGGAACAGTGCTAGAAGAAGGAGGGTGGTTTTAGTAGTCACTGCTGTCAAAATAGCCTGTGTCAGGCAGTGGTAAATTCTCTGTCATTGAAGATATTCAGTCAGAGGAAAGGATGCCATAGAAAGAATTAACATATCAAGGAATGATTGGACAAGGTGTGGTTTAAAACAGTGGACAACCAAACAGGGTTTTCACTTGTCTGCAACAAGATGAGAAAAAGGCCGAGCAACAGTGGCTCACACCTCTAATCCCAACACTTTTGGGAAGTCAAGGCAGGAGGATCGCTTGAGGCCAGGAGTTTAAAACCAGCCTGGTCAACATGGCAAGACCCCATCTCAACAAAGAAAAAGAGGAAAACAAGGCAATACCTGAATCAGGTATGTGCAGCCTTTGTCGGGGTAAGGGGGGATGCCTTGACTGAAATATGTCACCATAAAGTTGCTAACTTCCTATTTTGTGATGGGGTTTTACTTTATTCTGAATAATAAAATGTTATTTCATCTTTTTGTATTAAATGTCATTTCTGTTATAATATATTGTTAGCAAATAATAGATATTTCTTATTCTTCCTTCCTTTCTTTTTTTTTTTTTTTTTTTTTGTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGATTGCAGTGGCATGATCTCGGTCTGCCTCCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACACACCACCACACCTGACTAATTTTTGTATTTTTAGCAGAGACGGGGTTTCACCATACTGGCCAGGCTGGAATCAAACTCCTGACCTCGTGATCTGCCTGCCTCAGCCTCCAAAAGTGCTGGGGTTACAGGTGTGAGCCACCATGCCCGGCCTCTCTCTCTTTCTTTCTTTCCTTTCTTTCCCTTCTTTCCTTTCCTTCCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTGGTTTTGTTTTGTTTTGTTTTGTTTCTGAGACAGGGTCTCACTCTGTTGCCCAGGCTGAGGTGCAGTGACACAATCTCAGTTCACTGTGCAGCCTCAGCTTCCTGGGCTCAAGCGATTCTCCACCCCTCAGCTCCCTGAGTAGCTGGGACTACAGGTGTGAGCCACCAATGCCTGGCTAATTTTTGGTATTCTTTGTAGAGACTGGGTCTCACCCAGGCTGGTCTCAAACTCATGAGCTCAAGGCGATCCATCCGCCCCAACCTCCCAAAGAGCTGGGTTACAGGCATAAGTCACCACACCCAGCCATAAATGATAGGTATTTCTTATGCTGTAAGCTATGCAAAATTAAAAACTCGTAACCTTCTATCAGTTCCCTTTTTTTCCTTTAACATCTTGGTCTTTAAAACAAAATTTAAAAAAGAAAGAAAGAAAGAAAGAAAACTGTTGCCTTAGTCCTTGAGAGTCAGTGGCTCAAAATGTATCCCGTTTATCTTTACATAAACTTACTGCAAGTGAAGAATCTGAATTCAAACTTCTTGGATGTTATTTTGGTCTTCATTTAAACTATGTGAGTATAAATAACAGAATGCACAGTATCCTCCAGAAAACAGGTTATCTTCATTTCATTTTACAAATGGTTGTCCATAAGATAGTTCTAGAATTGTTAGAATTGTTGTTGTTATTGTTGTTGTTAAGGGATTCTGCACTGCTTTCAGTTTTATTAAATATCCACAGAATGTTAATAGATAAAACTAATTTTTTTTTTTTTAGAGAAGGAGTCTTGTTCTGCTGCCCAGGCTGGAGTGCAGTCAGCGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCTGGATTCCAGCAATTCTCCCGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCATGCCACCATGCCCAGCTAATTTTTTGTATTTTAGTAGAGACAGGGTTTCACTGTGTTGCCGGGCTGGTCTTGAACTCCTGAGCTCAGAAAATCCACCTGCCTTGGCCTCCCAAAGTGTTAGGATTACAGGAGTGAGCCACTGCACCCGGCCAAAACTAATTTTTGAAAATAGCCCTAGCCTGGCTGGGTGCAGTGGCTCACGGCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGAGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTGCTAAAAAATACAAAATTAGCCAGGTGTGGTGGTGCATACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCTCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCTTGCCATTGCACTCCAGCCGGGGCAACAAGAGCAAAACTCCATCTAAAAAAAAAAAATAGTCCTAGCCCTCAGGAAACTGACATGGTATGTAGGTTTGGACCAGACCTAAATAAAATAGCTTCAGTTAACTATTAAATTATAATTTAGGAACCAGAAGGAACTTATTTATAACAAAAACTTTGAATTGCCAGAATTTTTACAGATTTTAGCAGAGCAGAGTAAATTAATAACATCTGATTGCATGTTTCCTTTTCATTTTCCATAAAGAAAAGCCTTAAATCAAGCCATTTTTTTTTCCAGAGGGTAATGTACTAGGGCTACAAATAAATTCATTTAGCCCAATAAAGGTAGTCTTAACAGTAGCCAGAGTCATCTGGGACCATTGTAGCATCTTAAACACAGATTCTAAGAAATGTTTAGAAACTATAAAGAACAAAATAGTTATGTCTTCATCTGCTGAAGGAATTCTAATTTGCACATGAATAAGACACACAGCCCCTTTGACTAACCTGATGAAGATAAAACAGTGTCCTGAGTCAAGGTGAAGCTCTTTAAGATGGGAAAAAAATGCAAATTTGATATTGAGGCCATGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCCACAGAGCGAGACTTTGTCTCAAAAACAAAAGATACTGGGGCCATAGGAGGAATGTGATAAACCAGATGGTAGAGGAGAAATGCCATTATGTGCAAGAATAAATGTAGAGTGCAAAATGCTCTGGGTGTTGATAAAAGGCAATTACAGTAAAAGCCTTTCTAAGTAAAAAGGTCCATTGTAAAATCTGGCGGCCACATAGCCTAGTGGTTAGGAATATAAGCCCAGGAATTGCACTAGATTTGAATCCTGGTTCTACCACTAACTAGACATGCGACACTGGCAAGTTATGTAGTCTATCTGAGTTTTGGTTTCTTTTTCACTAAAATAAGGAAATCTATAAAAATATATCTCAGCCAGGGGCAGTGGCTCACGCCTGTAACCCCAACACTTTGTGAGGCCAAGGTGGGCGGATCACAAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATAGCTGGACGTGGTGGCAGGCACCTGTAACCCCAGCTGCTCGGGAGGCTAAGGCAGGAGAATTGTTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCATTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGTCTCTAAAATGAGGATAACATAGTACTCATCTCTAGGACTTTGGTGGTGTTTACATAAGAGTTAGTTCCTGTGAAGTACACAGAATAAGACAAGGCATACAGGAAGCACATGACTCACTTTCTCATCTCCAAATCTTTGCCTATATGACACCTTCAGTGAGGCCCTCCCTTGATGGCCCTAATGAGTTGGCAATCCCATGCTTTCTGTCCTCTTCTGCCAGTTTATTTGCCTTCCCGTTGTAGAATGAGGGAATATTAATTGTGCTCAGAACAGTGTCTGACACATAGTGGGTACTCAATAAATAATCGTGTGTGTGTGTGTGTGTGTGTGTGTGATAACTGGTATTATTTGTTCAAGAGGGATTTTAGATTAGGAGTGGTGAATTTGAGAGGCACAAAGTATAAGAGGGAAAATCAAAGTGCAGCAAGGGTGGCAGTGGCAAAGGAATGAGATTTAAGGGATAGAGGCTTACAAGCAAATGGCATCATTAGGTATAGATCATTGTTGTCATTTAATTCTCAACAATCAAGATAAATGAGTTATACAGAGAAGATTATTCATGCTGCCCTAGGTAGGCCACTATTTACCATGCTTATTCTCAACAGAAACCAGTAATTCTAACTCCTTTTGTCTTACAG
Seq C2 exon
GCTGGAGATATAATAACAGAGCTGGAATCTGTAGATGATGACTGGATGAGTGGAGAACTTATGGGAAAATCTGGAATATTTCCCAAAAACTACATACAGTTTCTACAGATCAGCTAGAGGAGAAGCTTGTCTGTGTTCCTTGGCACAAGAACTCACTTGAACTATCACCTTGACTATCAGATATGTTTTTGCACTATTTTTTTTAACTGAAAAAGAAATATCTAAGCTGTACATGGTACACTAGAATTTTCTGAAAGCAGAAAACGTTCAGATTTTGTAGTTAATTTTCATTACAATAGAAACATGCACATGGAAACCCATGAGCTAGGATTCTACCGAGGAAAACATCTAGTGGGATTAGCAAGGTGAAGGGAAAGCATCTGGTGGCATGGCAGCATGGGGAGGCTCACACACAGAAGTTGCACGTGGACATCTGTTTTAATCAGCACAAGTGAATTAACCATGCTTCTTCATTTTTTTACTTTAGTTAAAAAAGAGGACATTTAATATTCTACATGCTGTAACTATCAGGACATGGTTAGCAATCTCAATTTCATTTTTGATATTCAAATTAATTCTTACAGCTTGAGCATATCAGCCTTATTACCAGAGCAAATCCTTCCTTCAGATGGGATAGTTTACTGACTAGTTGGAGCATTTGTAAGCACATGGTGAAATCAGCCCCTGCCCACCAAAATAATCTTTATGTTACCAAGTGATTCCCATTTGTCTAAGGATTTGAAGGGGGTCTAAATTGGATGTATCTTACTTAGTCTAAAGAACCAAAACCATCCCTGAAATGCCTTGCTAATACAACTAATCCTTCCATATATGTGCCATACTTATTTTTTTCCTCAGTGTATACTTTATGTTAACAGGGTTATTACAAAGCACATTTTCTGAATCTGCAATCATTCCTTTGACAATTACTGGACCCAAAGGAAAATTCATTTTCTTTGCATTATTCCAGTAATATATAAAAACTGTGTCTTGTTATAGTAGTACATTATGAATCACATATAAAATCTTACAATACAGAACAACTGTTAAGATGGAAAACAGTGCCAAACCTCCACAGCTCATTTCTTTGTAATATAATCAGAATGAAAAATAATTTAAGAGGACAGAAGACTGGTACTTTTTTGTTTTATTTTTTCTCTAGCTTATCCCTGCACAATTATTAGAGTGAATGAAAAACCACTTTCCTGCTTTCCATTGTTATAAATTCTAAGCTTAAGATAAAAGTGGTTCTTTACATGACTGAATCAATTACAATTTATGGGCTAGAGCCAAATAGGTTGAAGACAATCATCCAAACAGATCAATGGAATAGAATTTCATTGGAAATGTAAAACACTTTCCCAACAATGGTCATGACTTTCTTCTGTTTTTGAGAAGAGTTTCATATGCTGGACCACATTTTAGCTTTTATTGTTTTTTTTTTCCCATTGTCCAAAAAGTTAAGCAACAAGTGGCCACACTTTTACGTGACTACAACCTGGAGTTCTGCAAAGAAGGTAATATTTACTTGGTCTTTGACTAAAGTTATCTCCCCATTCTATGGTTACATTTTATTTTGGACTATGGGGACTTCTAATACGTTTTGGTAAAGAAGAGAGTATAAAGAAAATTCTTGTCAAATTTCACTCAAAAGTAATTTCATGAGAAATCAATGATTTAAAGCATTATCCAAATTAAATTATCATTTGCAGCAAACTGTACAACAGCAGGAAGGATATGGAATGGAACATGAGGTATATATCTTTGCCTTTATAATTTTAACATCTTATATTGAAGATTCTGAAAACCTATCTTTATTAGAGGAAAATCTCAATCTTCAGTTTTGGCCTTCTGTCAGCAGAATGATAAGTGCAATAGTTGTAAATCTACTTGACACTGTAATAAACTGAACTGAACTTTCAAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686-SH3D19:NM_001128924:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(30.6=45.5)
A:
NA
C2:
PF146041=SH3_9=PD(65.3=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)