RnoINT0134663 @ rn6
Intron Retention
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185425868-185429630:+
Coord C1 exon
chr2:185425868-185425965
Coord A exon
chr2:185425966-185429513
Coord C2 exon
chr2:185429514-185429630
Length
3548 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TAACTCCTGTCTCCTTCCAGGCT
3' ss Score
10.84
Exon sequences
Seq C1 exon
CTGAGGCAAAAAGTGTGGCTTCCACAATGCGGAAGGGGAAGAAGGTTAAAGCCCTGTATGATTTTGTTGGGGAAAACGAAGATGAACTCTCTTTCAAG
Seq A exon
GTCAGAATATGTATCTTTTTGTGCTCACTAACACTACCTATTTTTGCAATGTACATATGAATGGAATATTGATCATTACCTAAGAATGAAGAGTTCTCAGGCCCTATTTGAAACGGAAGAGTGTGGACAAGGCTGGAAGTCCTATGGTTCCAGCTTTTGGGGAGCAGAGGCAAGAGGATCACATTTTGAAGTCCAGCTTGAACCTCTAGTGAGGCCTTATCAAGAAGAAAAGGGGTGACAATTAGGGAGGAAGAACTAAATAAACTGAGTAAGATCTGATAGTTTACATCATCAACTGTCACTGAACGGCCTAGGGGAAAACCTTAGCTTAGTGATCTCAGTCTTCAAAGAATCCCTTGTGGCTTGGCTTTACGATGGCAGAACTTGATGTGGGAGTTTTCACTGAGTGTTCTCCTCAGTCCTCACAGCAGCTACCAGCATCTGAAGTTAATGGAGAAATCATGCTACACATGTTGGCTTTGATGTGTGTCAATTCGCAGAATTCACAGCATACCCCACAGAGAACAGGTTGTCTTCAGGGATGAGTGGCTCATAAGGCAAATAGTTGAGTTTTTTGTTAAGGGATGGTATATTGGTCATTAATATCTATTAAATAATATTTAACTATAAATGTGCATAATGTTAGTAGACAGCTATCATATATAGTCCTAGTACTCACAAAACTGACAATGGTTAGGAAAATAGCTTCAACTATTCATTATATTATAGTTTAGGGTAGTAACTTATTTGTAACAAATTTTGAATAGCCAAAATTTTACATACTTAAGCAAATTATACATAAAATACATCTGACAGTTACCGTGTTTTCATTCCGGTCTCCATAAAAAAGACTTTTTTAAAAAGATTTATTTATTTATTATATATAAGTACACTGTAGATGTGTGTCAATTCGCAGAATTCACAGCATACCCCACAGAGAACAGGTTGTCTTCAGGGATGAGTGGCTCATAAGGCAAATAGTTGAGTTTTTTGTTAAGGGATGGTATATTGGTCATTAATATCTATTAAATAATATTTAACTATAAATGTGCATAATGTTAGTAGACAGCTATCATATATAGTCCTAGTACTCACAAAACTGACAATGGTTAGGAAAATAGCTTCAACTATTCATTATATTATAGTTTAGGGTAGTAACTTATTTGTAACAAATTTTGAATAGCCAAAATTTTACATACTTAAGCAAATTATACATAAAATACATCTGACAGTTACCGTGTTTTCATTCCGGTCTCCATAAAAAAGACTTTTTTAAAAAGATTTATTTATTTATTATATATAAGTACACTGTAGTTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAACCACCACGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCAGTCCTCCAGCCCAAGGAAAGACTTTAATCAAACAATTTTGCAGAGAACTATGTAGTAGTGCTACAAAGAAATCCATTTATCCTGGTAAATATACTTTCTTTTTAAAGTAGCCAGGGTCATCTTAGACCCTTGCAGAACTTTAAATCCAGGGTCTACGAAATTATTAGACATCATCCAGAACAAAATCTGATCTTCATCTGATAAAGGAATCCTAATTTGCACATGTGTGAGACACATCCTCTGTAACTTAGATGAGGATACACCAGTACTGTACTCTCCGTCAAGGCAAAGCGCCTCTAATGCGACTGCATGTGAAGCCAGTATTGTTGCTAGGGATGGGTAGGATAAGTCACTGATAGAAGGAAGCATGGTTGTGTGCAAGAATCAGGGTATAATATGCTCGGACTGTTACCAAGCAGTGTTATCGCAACTTTACACTGTAAACTGCGGCAGCCTCATCATAGCCTCTAGATTAGGAATATGGACCTTAGAACACCCTAGAATTTGAATTCTGGCTCTCCACTCACAATATGTGCAATCCTGGTAAGTTCTGCTATGGTGGCTAGTCTTTGGTTTGTAGTTATTGTTGTTTTCCAGACAGGGTTTCCCTGTGTAGCCCTGGCTGTCCTGGAACTCATTCTGTAGACCGGGCTAGCCTCAAACTCTGCCTGCCTCTGCCTCTTGAATACTAAGATTAAAGGCATGTGCCACCCAGCCTAGCATGCTAGCCAGTCTCATGCCAATTTGACACAAGCTAGAGCCATCTGAAATCAGGGGCCCCCAATTGAGAAAATGCCTCCATAAGATCTGCCGGTAGAGCATTTTCCTGATCAGTGAATAATGGGGGAGGGCCCAACCCACTGTGAGTGGTGACACTACTGGGCTCAGAGTCCTGGGTTCTATAAGAAGCAGGCAGAGCAAATCAGTAAGCAGCACCCCTCCAGGGCCTCCACGTCAGATCCTGCTTCCAGGTTCCTGCCCCGTTTGAGTTCCTCCAATGGCAGATCGTGATCTGGAAATATAAGCCAAATAAAGCCTTTCCTCCCCAGCTTGCTTTCTGGTCGTGGTGTTTTGTTGCAGCAATAGAAACCTTAACTAAGACATATATACTGCCTGAGTTTCAGATTATTTATCACACAAGGAAATTGAGAACTGGAGAGAGGGCTCAGTGGGTGAGGCCCTTGCTACATGCATGAGTTCTAGGATTCAGATGCCCACATCCATGTAAATGCCAGGAGGTCATGGCAATCTGGTGGGGACGGGGATCTCCAGAGCAAGCCGGATAGCTGTACTAGCTGAGTTAGTGAGTTCTGGGTTCAAGTAAGAGACCTTCCTTCCATATCCTAAGCTGCAGAATGATTGAGAAACACTTGGCATCAACCTCTGGCTTCTATGTGTACCCACAGACACATGCACATGCACTAATGCACACACAAGCCCACACACACGCACACCACACAAAAAACTATGAAATAGCCTCTCCCTCACAAGGATGCTGACAGTGTTCATCTATAGAACTGTAGCTATTGAACTTTTGTGAGGCACAGACGAGGACAAAGCACACAGGAGCAGGTGGCTCACCCTTTCACCTGTGACCTTTATGTAAGCATGACTGTCCGTGTGCCCCTCTTAGACGGCCCTCATGGGTAGCGAAACCATGCTCGCCTTCCCACTATAGAGCAAGTCCATTATACTGCATTATAACAGTATTACCCAGGACAGTATCTGCCACATAGTAGGTATTCTGTAAACACTTGTTAGATAAAGTTACGTGCATTTGTGTGTATATAGCTGGTACTGTCTTAGATTAAAGAGTGATTTAGATTAGGAACTGTGCGTGTGGGGGGCATAAAACATAAGCAGGAAGCTCAGCGTGGAGCGAGGCTGATGGTGGCGGGGGACTGAGTTTACTTTGAGAAAAAGAAGCCTGCAAGCAAATGTCATTAGGTATATATCATCTGTGCAGTTTATCATTTAATCCTCTCTGCAAATCAAGATAAATGAGTTATATAAAGAGAAGATTATTCACGCCGCTCCAGGTAGGCTACGCTCTGTGCTTGTACCCTGCAGAAACCAATAATTATTTCTAACTCCTGTCTCCTTCCAG
Seq C2 exon
GCTGGAGATGTAATAACAGAGCTGGAACCCGTGGATGATGACTGGATGCGTGGAGAACTAATGGGAAAAGCTGGGATCTTTCCCAAAAACTACGTTCAGTTTCTACAAGTCAGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752:ENSRNOT00000015802:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(30.6=45.5)
A:
NA
C2:
PF146041=SH3_9=PD(65.3=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]