BtaINT0132528 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016813 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr17:6666925-6670697:+
Coord C1 exon
chr17:6666925-6667065
Coord A exon
chr17:6667066-6670624
Coord C2 exon
chr17:6670625-6670697
Length
3559 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGG
5' ss Score
4.51
3' ss Seq
CTGCTCTGCTTCTCCCTCAGGAC
3' ss Score
10.73
Exon sequences
Seq C1 exon
CGTGGGGACGTCCTGGTGATACTGAAGCAGGCAGAAGGTAATTACTTGGAGTGCCGGAAGGGAGACGATGCCGGCAGAGTTCACCTGTCTCAGATGAAGATCATCACGCCGCTTGATGAACATCTTAGCAGCAGACCAAAT
Seq A exon
GTGAGGAATTGATACCGTACCATCCTCATATCACACATGGCAGCACATTTCATAGAACTATTAATTATAGCTCATCCTCAGGTTTTTATTAGCACGTTTATTTTAACCAGAGTAAAAATTACAGTAGCGTTTTATTCCATTTTAAGAATAAATTACTTCTAAGAGACTTGCCGCTGCCAGACTAATCACTTTGATACAGAGTGACTACCGGGTGGCTTGCCTTCCTCGTATCATGCTGACTTACAGCATCCAGGACACGTAGTCATTAATTTTCAACTGTGAGAGCTATTTACTTTTGAAATAATGTAAATACATTTACCAAAGTACTAGAGATTGGTTTTCTAGCAGAATGGATAATTATTTTAAGGAGGGCCCTATAAAGGCTGACATTAAAACACTTCCCAGTAAGATTTAAGGTGAGTATAGACCTTGTTTCTCTGATCATAGCTCATAAAATAATGAAATGAAATGTTACAACACTCTGAATTCACTATTTAGGCCTAACAAATCTGTGGAGCCTAGGAGAATACAATGATTATTGAAGGTCATTTGTTGAGCAAGAAAAATGCCATTGAACAATTTACAGAGGCATATTTTTTAAAGAGCTGCTTAGGGTACCCAGTTAAATTTTCACTGTCTTAGGTAATGTGGCGAACATGAAGAATGAGACCTATCAGTCATTAGGCCAAGTTAAAGTCTTTGGTTTGCCATCATCCTAGTTTGCATAATCTCATCCAGTTCTTCTTGGAGGGCAGTCTGTCATTTGAGGTTTGCCAAGAAACTAAAGATTCGAGTTTCAGAGAGCAGAGAAGATATGTGTTATGCTGGCCACAGCTGGAATGGTGACATTTCTGACTTCAGCCTCGTGGGGAAAGCTCTTCTGTCGCTCACTTTCTCTTTGTTTCAGGAAGCATTACCCATCTGTGACCACTGTTCTGCCTCTCTTTTGAACACGTTGGTGGGTAGCCATGGGGATTGTACTGCCGGAAAGCTTTCCTTGATGACAAACAGAAGCTGAAAAAATTACAGCTTATTCTTTGTAAACACTCACGGTTTTGTCCCTTGGAACATTACCTTCCTCATGCTTGTGCCATAGACTTGCAGAAAGGTGACCACCAGTGACCCACAGCTGGTGAAACCCAAGTGGGGCCTCTCTCAGGCTCTGGGTCATGGCTAACATTACCCTTTTCAGAAAAGTAAAACCTACTTGAAAGCCTAGTGTGAAGGTAAATATCCCTAAAACTGTGTTAGGCTCTCCCCTGCCTTAGTCAACAGAAGACATTGCACTTTATGAGTTAAGGCCGGGCTGTCCGAGCAGGGAGGCAGGGATTGTCACCTCGCGTGGCTCCCACAGCTGCGGGTCTCACTTCCCCTCCCACCACCGGAGGCAGTGATCTGACCTCTCTGAACCTCATTTTTTAAATGTGTGAAATAGATATGAGAATCCTCAGAGTTGATTATAGAATTGATTTATCGTTATGATTCCATTTATATGAAAGTTCAGAATGGGGAAATCCAGAAGGTAGATCAGTGGTTGCCCAGGGCTGGGGGAAGGTGAGGGGGAGTGATGGCCAATGGGTAGGAGGCTTCTGGAGGGATCATAAATGTGTCCTAAAGTTAGATTGTGGTGATGGTCACACAATGCTGTGAATATGCTAAAATTAGGTACACTTTAAATGCTTGAATTTTATGGCAAGTGCCTTATATCTCAAAGATCCTTAAAAAATTAAATGAGCTGATTAATTTAGGTAATTTAGCCCCTGTAAGGTGCTTAGTATAGTGAATAGTGCATAGTGAGCAAACAGCGTATATTAACTATTCTCATTACTCATTAGTATTAGCTATTATAGTCATACTAGAAGGAACTTTGAAATATGTTAGATTTTCCTCCCAGATACCCCCGCTAATGGTGTGTTCCTGCCCCTGAGTTGTTCCTGCCCCTGTGGCCAGCCCCGTTCGCCTGCCCTCTCGCCCTTCACCTGCCAGGCCAAGGTGATGAGCAGCATCAAGGGGACAGCTGTGCACAGGAGGCGGGGAAGGGGAGCGGGAGGCACAGGCTGCCTGCGGTCCCACCTCCACCCATTTGGCTGGTGTCTAGGCCTCGGGCCATCTGCAGGTCCATGTTTATGTTTGGTGTGGGGTAGGCCTCTGCCTTCACTTTTTCCAGATGTAAAGCCATCTAGCCTAACACCATTATTGGAGCAGTCATCCCTTTGTCTACAGATGTAAATCAGAAAAAAATGAAAACCACACATATACTAAATTGGATAAATAGTAATTTTTAAAGCCCCTCCAGGCTTCACATATCTCATAGTTCCTTTACAATCCCTGAAATTCCCATTATGCCCATTTATTTAAGAAAAAGCACTAAGCAGCCTCTAAGAAAATGTCGGTGTTGCTTTGGTAAACTAACACACCAAGCTGCCTTAGCCCTTCCTGTATTACGCTGTATTACGCTCTTCCTGAGCTGTATTACTCTCAGCTGACGTGAGAGAAGGCAACGTGCCTCCACAGCTGCCTTACAGTTGATTCAGAAAAGAGTTGCGCAAAGGAGCTGCAGGGCGGACATGGAGGGAGTGGGCCATGACCCCTGAGGTCTGAACATCATGGTCAGGAGAGGGGCAGTCCCTGATGGGCAGGGGCCATTAAAGGAAGGAAGAGATGAGAAAGGCACCAAAAAATCACTTTCATTTAAGAATCAAAGCGATTAAGTTATAATTCCAAATAATATCCATCAGTCAGACTGGATGGTAATGATGTGGATAACAACTGCTTGTCATTAAGAAACAGGCAGTCTTCAAATGTGGCTTCTCCTCTGGCCAGTCTAAGCAGCTGGTTAGATGGGTAGAGAATATTGAATTCTGTCTGCTAATTTACTTAGAATTACTATTGAATAAACCATTCAGATTAAATAGAAAATCCAGGCCAGGCATGGGAGGTAGCATTGGCTTTCAAATTAGAGAAGGCATTCAGTTAAGTGGTAATAAATGAAATGGATTTTACTTTTTGTGAATTATACTTTTGTAAAAGTTGTTAGCTCTTTTCATTATAAAAGGCAAGAGTGTAAATTGCAGAACTTCCTTCTTTTTCCATCTTAATGAAGAGAATACTTTTAAGGTCTTGTTCTTAAGGTTTAGTCCTGATCATAGTTTATGGAAAAAGCGATCCCTGAAGGGTGAAGTGGTAAAAATGACTACCTCAGGGTAGAGTAGATGCTGCTTTAAAACACAAAAACAACCGACAAAAGCTTAAGTTTAATTTCCTTTTGTTTACTCTGTCAGTTTAAGAAAAATGCTGGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTGCGCGGGGGCTATCATAATTGAGATAATTCTCCTCCAGCAGGGACTCATACCTTTTCTACTTGGTCATGATTCTCTTGTTTGGCTCAACTGTGTGGTTTGCATCTTGTACTCATAATTGTGTCAAGAGGACCCCAATGAGGAAAAAAAAATGGTCTCCGAGTGAATAATGAACCCAGCGTTCATCATGCGCACCGCACTCACTGCTCTGCTTCTCCCTCAG
Seq C2 exon
GACCCAAGCTGCCCTCAGAAGCCTGTTGACAGTGCTGCCCCTCATGCCATCGTTCTTCATGATTTCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016813:ENSBTAT00000022368:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.360
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PD(63.0=72.3)
A:
NA
C2:
PF0001823=SH3_1=PU(17.4=32.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development