GgaINT0073744 @ galGal4
Intron Retention
Gene
ENSGALG00000010081 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:32697220-32698316:-
Coord C1 exon
chr4:32698239-32698316
Coord A exon
chr4:32697293-32698238
Coord C2 exon
chr4:32697220-32697292
Length
946 bp
Sequences
Splice sites
5' ss Seq
AAGATAAGC
5' ss Score
2.04
3' ss Seq
TTGAATTTGTTTGTTGCCAGGAT
3' ss Score
6.79
Exon sequences
Seq C1 exon
AGGGAAACTGGCAAAGTTCCTCTGTCTCCTATGAAGATAATGACTTCCTTTGCTGAGTATCTAAAAGATGGGCGAAAG
Seq A exon
ATAAGCAGTTAGTTTTACAAAGGTGATGTACTTGATGTATCAGTGAATTGACTTTTGGTCTTCAAAGCATTTTCTTTGCTCTGGGCTTATACAAAATTTAATGTGTTTTAGGGCATGGCTGTATTAATATCAAATAGCCAGCATAAATTCTAGCTATGAGCAGACTTGATTAGCAGAAACCTATAGCTTTCTATTCTCTCTTGTTATCCGTATTATTCTGTCCTTACCTTCATTCACATTAGGCTTTTCTGGTTGTTTCCTTTGTTTTTAACAACAAATTACTTTGCTTGAAAGCAATTCACGCATAGTGAATGTAAAACAATTTGTTTTTTACACAGTGATTGAAAAACAGTATAGTCTAAAAACTCCTTCCTAGTGAGTGGGTTAGAGATGAAGCCCAACATTGTGAATATAATTTCCCTTTAGAAAGATTGCAATAGAAATTTGTAATTTCTCCTGTTATCTTCCTGTAAGCTTCCTAGTGTCCTGCTCCCCACTCTGAAGTACTCAGCAGTTGGTAGATGTGCTGACTCTGGTGTGTGTGCTGGGTCTGAGCGTGGAGGAGTGACTGGTGACATGCAGTATTGAGCGACAGCACAGAATTTGGCCACAATCTTTTGCAGTGAGAATTGCCATCAACTCTCCAGCTTTCTGACACACAGGGCTAGTTGAGGCTTTGTCTATACTAGGAAAAAATTACATGCCCTCCTTTTCCTTTTACTGGGTCAGAAGTAGATTTCAGTGAAATACCGTTTGGTTTACGCTGACAGAAGACATAGAGAATATAGACAGGTGACCAATACTTATTTTTGACTCCTACAGTGATTTTCTGATATTATAATAATGTTGTGTCCGAAGTCATAAAATGACTTCAAGAATTCATGACAGCAAATCTGTGTTAATATCTTCCATGACTTATAAACTGCTTGAATTTGTTTGTTGCCAG
Seq C2 exon
GATTCAAACAGCTCTCCAAAAGTTTCTGACACAAGTGCTCCCCATGCTGTAGCACTGCATGATTTTTCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081:ENSGALT00000016385:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=NA C2=0.520
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=PU(17.4=32.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]