RnoINT0134669 @ rn6
Intron Retention
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185414224-185417487:+
Coord C1 exon
chr2:185414224-185414364
Coord A exon
chr2:185414365-185417414
Coord C2 exon
chr2:185417415-185417487
Length
3050 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGG
5' ss Score
7.34
3' ss Seq
AGCCCTGTTTCTCCCCTCAGGGG
3' ss Score
10.81
Exon sequences
Seq C1 exon
CGTGGAGATGTACTTGTGATCCTGAAACAGGCAGAGAACAATTACCTGGAGTGCCGGCGGGGAGAAGGCACCGGCAGAGTCCACCCGTCCCAGATGAAGATTGTCACTCCCCTGGACGAGCACCCCAGAAGCAGACCTAAC
Seq A exon
GTAAGGAAGTGCTGTTGTGAGACTTCGTACTATGCACGGTGACCCCATCACGGAGCTAGTAATTACGTCCTCCACTCCCTGAGTCTCTCCCATCAGCAGCACTGCTTTAACCAGGGTGGAAATAACAGTAGCAGTCTGCTCCAATTTTGGGATAAATGACTCTAATGCTGGCCCAGAGACTCCTGGGTGTTCTGCCTTCTTCCAGGCCTGGTGGCTTGTGGGAGCTAGGACACTCGGCTCTCTCCTATTTTCGACTTCGAAAGCTACTTACTCTTAAAGAGTGTGAACCTGTTTATCAAGTACCAGAGGTGCTTTCTCTAGCAGAATGAATCCATTATTTTAAAAGGAATCCTGTGAATGCTAACTCTGATACAAAGGACTTCTTTAAAATGCAAGCTGAGCCCTGTGTTGTGATCCACACCTTTAATCCCAGCACTCTGGAGGCAAAGGCGGGTGGAACTCTGTAAGGAGGTGGAGTCAAGCGGGATCAGAAGTCCAGGGTCATCCTTGGATGCATGGTAGAGGTCAAGGGTATCCTTACTGACAGGAGACCCTGTGTAGGGAGAGGAAAGGGAACTTTGTGTAAACCTACAAACCTGGTTTATCTGTTTTAATAAATTCATTAGATAATGAAATATAATCCAGTGACTCAAGTCACAATTAAGGCCTGACAACAAGTTTTTGGAGCCTGATTTTTAAGGCCTGATATTAGATGGTTGTGAGCCACCATGTGGTTGCTAGGTTGTGGATTCAGCACCTCTGGAAGAGCAGTCAATGATCTTAGCCACTGAGCCACCTCTCCAGCCTAGTATTAGCCATTCTTACCATTACACTATCATTTCTTTAGCAATGAAGACCTTTGAACTGTCTTAGATTTACCTACAAGATATGCACCCTAGTAGTGGCGTCTGGGTTGACCTTCTCCCTTGCGGACAACCCCGTCTAGGCTGTTGCCCCTGATGAGTCTCCCCTGCTCATCACTGAAGACTTGAGAAAGGACACTGACTGGAGGCTCAGATCACCGTCCTAAATTTCTCACTCTTGGGTTCACTTGGAGACTCACATTCATGTTAGGTTTAGGGTAGATCTGTGTCTTCACTTCTTCCAAGTCGCTAGCCATCCAGCCTAATATTGTTGTTGAGTGGCCATTCTTTTTTCTGAAGATTTAAATCAGGAACAAATAAAAATCACACACACACACTTAGTTACATAAATCGGTGTTCTTAAAGCCACTGGAGACCTGAAATAGCACAATTACCACAGCTCCCATGTTGTTTGTTCTTTAGTCAAAGGCAGTGAGCAGGAGCAGGTGTGAAAAGCTGCCTCAGCCCTTAGGTCTCGACCAGAGGTACAGTTCTGCTTACCTGTATTAAGTACACGGTTTGCCTCTGCGACACATTTTCATTAAAAGGACAGGAGGATTCAGGGAAGATGTGACGGAAGTGCAAGGTGGGAAGAGTGGGGCCACTTCTCCCAGGACACTGTGATCAAGCCAGTGCCCTGCAGCTGTGGAAAGGCCAGAGATGACGTATCCCTGAGAGGTCCAGAGTCATTGAAACATGAAGAAAGAAAGCACACAAAAGTCTACCTTCATTCTAAAAGTTTGCTAGCATCGAATATTTTTAAGTACCATTCCCAAGGGTCAAGGATGGAGTCTTCCTTGGCCTGGCCTTGATCTGCAGACCACCTGAGAAAGTAATCGACATCCTGTAACTGGATTTGATGATGATGATGGTGATGATGGTGATGATGATGATGATGATGATGATGTCATCATTGATAAGCCTGTTTCTTCACATAAGAGACTAAGAACCCAAGTGTGGTGGGTTCCCAGCACTCAGGATGTTGAAGCAGGAGCATCATGAATTTGAAATCATGCTAGTCTATATAGTGAGTTCAAAGCCTACCTGGAGAGATAGCCAGACCTTGTCTCAAGAAATAAAATAACACAGGGTGTGGTGGGTGTAAGCAGAGGCAGGAGGATCTCTGATTTTGAGACCAGCCTGGTCCACATAATAGCAGTGTCAGCAGGAGAAGGGGCCGGAGGAGGGGGAAAAACAAGAAACAAAAGTAAAACCAGCTGCTTGTCAGTAATAAAGTGTCATCTTGGATCTCCCGGTCTCCTCTGGCTAACCCAAGCCATTGTTTACCTAACCAAAGAATACTGCCTTCTCTTGGCTAATTTACTTAGAATTGCTTGTTGGATAAGCCATTCAGATTAAATAGAAAGGCCAAGCATGGGGAGTAACATCGCTTTCAGACTAGAGAATGTATTCAGTTAAGTGGTAATAAATGAACTGGTTCTCCTTCTGTGAATTATACTTTATGGGAAGTCATTAGCTCCTTTCATTGCAAAACGCAAGAACATAAATACCGAACTCCATTCTCTTCCATCAGAATGGACTTAAATGTGAAAGCTCTGTCCTTAAGGTTTAATTGATCAGTAGAAGTGGGGAAAGTACCATTCACTGAAAGGCAAAATGGCTGAATCCCACAACTTTATGGAAGGAGAAATGTTATGGTGTTTTGTTCTTATTTCCTTTGATGTTTTTAAAGTTAAACAGTTCTGTTTTGTTTTAGTTTCTTCCTTTAAAATCAAAAAGCTTAGTGGGGCTGGAGAGATGACTGGGGGTTAAAGACTTGCTGCTACTTCTGTAGAGGACACAGGTTCAGTTCTGAGCATCTGCAGTTCCAGGGATTCCGGTGCCTTCCTTCTGTCTCTATAGGCACCGGGCGCTTGTATGGTGCACAGACATACACGCAGGCAAAATACCCATATGCATACAGTAAGTCTTTGAAAAGGAATGCTTAGTAACATTGAATTTTATTGAAATTTATTTCTGTACTCCCCCCCCCCCCGGCAAGAGCACATGGTTTTTGAGGTGGTGAGGATTCTCTCGCCTAGCTCCCCTGCGTGCTCTGCGGCTAGCACTCGTGCTGCAGCATTTCAGGAGGACTCCATAATGAGGACAAAACAATGGTCTTGCAGAGAAAAATGAAACTGGTGTCTACCCTGCACACCCCACTCACAGCCCTGTTTCTCCCCTCAG
Seq C2 exon
GGGTCAGGCCACACTCAGAAGCCTGTAGACAGTGGCGCTCCTCACGCGGTGGCTCTTCACGACTTCCCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752:ENSRNOT00000015802:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PD(63.0=72.3)
A:
NA
C2:
PF0001823=SH3_1=PU(17.4=32.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]