MmuINT0143082 @ mm10
Intron Retention
Gene
ENSMUSG00000028082 | Sh3d19
Description
SH3 domain protein D19 [Source:MGI Symbol;Acc:MGI:1350923]
Coordinates
chr3:86107212-86113178:+
Coord C1 exon
chr3:86107212-86107352
Coord A exon
chr3:86107353-86113105
Coord C2 exon
chr3:86113106-86113178
Length
5753 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGG
5' ss Score
7.34
3' ss Seq
AGCCCTGCTTTTCCCCCAAGGAT
3' ss Score
7.32
Exon sequences
Seq C1 exon
CGTGGGGATGTCCTTGTGATCCTGAAGCAGGCAGAAAATAATTACTTGGAATGCCAACGGGGAGAAGGCACCGGCAGAGTCCACCCATCCCAGATGAAGATTGTCACTCCCCTGGACGAGCGCCCGAGAGGCAGACCTAAC
Seq A exon
GTAAGGAATTGCTATCGTGAGGGTTTGTGCCCTGCATGGTGACCATGTCACAGAGCTATTAATTATATCCTCCACTCCCTGAGTTCCTCGTATCAGCAGCGTTACTTTAGCCAGGGTGGAGATATCACTAGCAGTTTGCTCCAGTTGTGGAATAAATGACTCTCATCATGTTGGCACAGATTGGGTGTTCCGCCTTCTTCAAGTCCGTGGTGGCTTGGGGAGCTAGGACACTCAACTCTCAGATTGTCAACTGAGAAAGCTACTTACTCTTTTAAATAATGTAAACCTGTTTATCGAGTACCAAGGGTTGTTTTCCTAGCAGGATGAATCCATTATTTTAAAAGGAATCCTGTGAATGCTAAATCTGACATAAAAGACTGCTTTAAAATGCAAGCTGAGCTCTGTATTGTGATACATACCTTTAATCCCAGCACTCTGGAGGCCAGCCTGGCCTACATAATGAGGTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAGAAAGAAGAGAGGGGCGGGGGAGGAAGGAAAGAAGAAAGGGAGGAAGATCAATCTAACAGGGTGTGGAGTAGCGGGTGCTCTCTCTGTAAGAAGGTGGATTCGAGCAGGATCAGAAGGCCAGGGTCATCCTTGGATGTGTGGTAGAGGTCAAGGGGATCCTGAGTGACAGGAGACCCTGTCTAGAGAGGAGAAAGGAAGCCTTGTGTAAACCTATAATCTTCATTTATCTGCTTTAATAAGCTCATTAAATAATGAAGTATAACCCAGTCTCAAGGCACAATTTAGGCCTGACGACAAGTTTGTGGAGCCTGATGAAGACTGTTTAGTGTGTTGCACTACTGTGACTCAGGTCACACTGTGAACTTGAAATTGTGTCATTTACTGGGGGGGGGGGGGGGGGAACGGGACACTGTTTCTAGTTCTAGTTGTACTGTGGCTCAGCCCTTAGCACACACCTTTAACCCCTTTGGGTGGAATGCAGACACGCCCTTAGTACAGACCTTTAATCCCAATGAAAGTAAAGTTAGTTTGTTGAAGGAAGCAGCCATGTTTGATGTCTAATTGAGTGTCAGTAATGAATCAGAGAAAGATTTGACGGAATAGGATATGCTCAACTCTCATAAGAAGATAGAGCAAAGAGAGCAGTGCAGAGGAAGAAGGAGAGAGGAGAGGAGGCAGTTTTACTGGGACAGTTGTACAGAGACAGGTTACAGAGACAGAACAAGCTAGACACAGGTGAAGACAGAACGAGCCAGAGAATGAGAACGAGTCAGAAGATTATAACACATTGCCAGAGTTAATATGAGGCCAAGCAGAGCAGTTTAGTCAGAGGTCGAGAGAGAAGCCAAACTGAATCAGTCAGCTTGGAGAGGAGTTTGAGTCAGAACAGCTGAGCTGAACCAGCCAGCCACAGTTGAGAGCTTACTCAGCAGTAAGTGTCAGAGGCTGAAAACAGTGTAGGCTTAGATAAGAGGCTAGAAGCTTCCAGGGCGAGGCCTGGGTTAGCAGGCTGAGGCAGTAAGCCTCAGAGATGACAGTTATCACAGGAGAACAAAAGTTACATTTACAGTTTAGCATTGCAGAAGACCAAGCTCAGGGTGTCAGAGAAGCTAGGCAGCTGCCCTGCTTCTGAGCAACGCTGCATGTTTGGAAGAGTTTAACTCTCCCGGTTAAGTGTTCACTCTGTCACTCAAGGTAACTGCCCACCAGTCACTCCACTCAAGTAAAGAGTTTGTTCTTCATCCTAGTTTTCATAAGCCAGTGTAATTCCTTCTTCTTGAAAGGCAGTTTATCCTATGAAGCTTTTTTCTAAGAAAGTAAAAATTATCATTTTAGGGAGAAGTTATGTTTTCAGCTCGTGCAGCTGGCACGTGAGAATTCTAACTAGTTCACATAGGAAACTTCTCTTACCCAATTTTCTCTGCTTGGGTCCAGCATCGGCCATCTGTTAGAGCCGCCCTTCCTCTCCCAGAGCATGCCGTTGGTAACAGCAGGACTTACACTGCCAAAAAGATCTATCCTCTTACATATATTTTTAAAGCTAAAAATGTAAAAGTTGTAACAGTCCAAAGTTTTCCCACTTGGAACATTGCCTTTTAGTTCCTCGCTGTGGCTTTGCAGAGAGTTGGCCTCCGGAGCCAGTGCGTTGTCTCTGCTGCTGATAATGAAATGAACTGTCCTATTAGGCTTTGGGGCTGGAGGGATTGTTACAGTTTTTAGGATTGTTACAGTTTTTAGAAAATGAAGCTTGAGTCACTGGCCTCAGCACTTGTCTGGTGCCCATTGCCAAGACCACAAAAAGCCATGGAGAAGAAGGTTCAAAATTGGGCATCTTCCCCTAAGTTGGTAAACAGGAGATATTAAATGTATCAATTATGGTTGAATCCAAAGGACTGGTCAGAGAGAAAGTGAAGGGTCGTCAGCAAGTGTGTGCCTTCCGTTTCCCTCCTACCTGGGTGGCCACAGAGTGCCGAAGCATTTTTTGTTTGTTTGTTTGTTTTGTTTTGCTTTTTATATGGAATGTACAGTAACATCCCCAGGGTTGTTTTTAGATTGACATGTTGCACAGAGACCCAGGAAAGCTGACTCCATGCAGACAGAAAGTAGATTGGTGCTTGCTTAGGGCAGAGGGGATGGTGAACGAGGAGTTGTACAGTAGGGGCAAATCCCACTGGGCAAGAACAAGCCCACTATCACAATGTTTGAGCCAATTTAAGGCACGCTTTATTAAAACTGTCCAGGACAGTGGACACCAGCCAGGTCTTTACCTGGGATTCCCAGAGAACAGCCCCAAAATATATTAGTCAGAGGCTTATAAAGGGAAAACCCACAAGGCTGTGTACTTCTCTCCTTCGTCCAGTTGGGGGCAAGCATACATCCTGATGGCCTTCCTGCCGACACACATCCCGCCTCCCCGTGTGATCAAGCTCGTCCTGCCCAGCTGGGGCAACCAAGTTCGTTTACAAAAGTGAAAGCATGTGGCCTGTGAACAACGCGCCCAGCATTCCTGGAGGCTGTCTGTTCTTAGGCAGGTCAGAGGCATTTGTGTTTTATAGATCTCTTGACACAGTAATTTAAACTTAAAACATAACTTTAGCCTTCACACGGGCTCTGTGGAGAAGCAGAGGGGATCAAAAAAAACAAAAAACAAAAAACAAAACACTGTAAACACAGACTTCAGTGATAGTTGCACAATTCCATGAATGTTCCTTAACCACATAGATCCTTTTTTTTTTGATAGTCATGCAGCAGTTTAACGATAAAAATATATTAATATTTTACTATACAGCAGCAAGAAGTTAGTTGTAAATTAAAAGCACATAAACATCTTTAAATGAAAACCTGTACAAGCCACATAGATTCTAAATGGATACATTTTATTTTGTATGAATTGTATCTCAGACATTTAACAAGTAGGTAATGTTAATGCATAGAAGGTGTTTGTTACAGTGGTTGGAGCACAACAATTGAGCAGTGGTATTAGCTATTCTTACTGTTATAATGTCATTACTCTAGCAATGAAGACCTTTGAACTATCTTGGGTTTACCTACAAGATGTGCACCCTGGTAGTGGAGTCTGGGTTGTCCGCCTCCCTTGTGGACAACCCTGTCTAGGCTGTTCCCCCTGATGAGTCTGCTTGCTCATCACTGAAGGCTTGAGCAAGGACCCTACCTGGAGGCTCAAATTATCTTCCCAACTTTCTCACTCCTGGGTATATTCAGGTCTTTGGTTCACTTGGAGACTCACATTCATGTTAGGTTTAAGGTAGATCTATGTCTCGACTTTTTCCAAGTCACCAGCCACCCAGCCTAGTATTCTTTATTGAATAGCCATTCTTTTTTCTGAAGATTTAAATCAGGAACAAATAAAAATCACACACACAATTAAGTACATAAATTGGTGTTCTTAAAGCCACCAGAGACCTAAAATAGCTCACAATTATCACAACTCCCGTGTTGCTCATTATTTAGACAAAGGCAGTAAGCAGGCGCTGGTGTGAAGCTGCCTCAGCCATCCTCTCTTGACCTGAGTTACAGTTCTGCTTCCTGTATTAAACAGACAGTTTGCCCCTGTGGCGCATTTTGGTTAAAAAAGCAGGAGGATTCGGGAAAGATCTGACAGGAGTGTAGAGTGGGAAGAGTGGGCCATTCCTCACAGTACACTGTGATCAAGCCAGTGCACCGAGGCTGTGGAAAGGGCAAGGATGAAGAGGTCAAGAGTCATTGAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAAAGCACCCAAAAGTCTACCTTCATTCATTTCATAAGTTTGCTAGTGTTAAATATTTTTAAGTAATATTCCCAAGGGTCAAGGATGGAGTCTTCCTTGCCCATGAGTAAAACCCTGGCCTTGATCTGCAGACCGCCAAAGAAAGTAAGCGACAGCCTGTAACTGGGTTTGATGATGATGGTGGTGGTGGTGATGATGATGTCATCAATAAGCCTGTTTCTTCATATAAGAGACTAAGGACCCAGGTGTGGTGACACACACTCATAAATCTAGCACACAGAATGTTGAGGCAGGAGCATCATGAAATTGGAACCATGCTAGTCTATTTAGTGAGTTCCAGGCCTCCCTGAAGATATAGCCAGACCTTTTCTCAAGAAATAAACAGGGTGTGGTGAGTGCAGGCCTCTAATCCTATCAGAGGCAGGGGGATTGCTATGAGTTTGAGGGCTGCCTGGTCCACATAAGAGCAGCAGCAGGAGAAGGGAGAAGAACAAGAAGAAACAAAGTAAAACCAAAGAGAGGAGTTGCTGCTTGGCAGTAACAAAGTGTCATAGTGGACCCCCTTCTCCTCCAGCTAATCTGGACCATTGTTTACCTAGCCGAAGAGTACTGCTTTCTCTTGGCTAATTTACTTAGAATTGCTGTTGAATAAGCCATTCAGATTAAATAGAAAGGCCAAGAACGGGAGATAGCACTGCTTTCAGACTAGAGAATGCATTCAGTTAAGTGGTAATAAATGAACTGGTTTTCCTTCTGTGGATTAATACTTTTATGGGAAGTCATTAGCTCCTTTCATTGCAAAAAGCAAGAACATAAATACAGAACTTCATTCTCTTCCATCAGTGTGGACTTAACTGTGGAAGCTCTGTCCTTAAGGTTTAATTGATCAGTAGAAGGGGTGCAGGGAGTGCCATTCACTGAAAGGCAAAGTGGCTGAGTCTCACAGCTTCATGGTAGGCTAAGTGTTATGGTGTTTTGTTTTTATTTCCTTCTAAAGTTAAACAGTTCTATTTTGGTTCAGTTTCCTCCTTTAAAATCAAACAGCTTAGTGAGGCTGGAAAGATGACTTGGGGGTCAAAGCCTTGCTGCTGCTTTTGCAGAGGACACAGGTTGGGTTCTGAGCAACTGCAGTTCCAGGGAATCCGGTGCCTTCCTCTGGTCTCCGTAGGCACCAACCAGGCACTTGTGTGGTACACAGACATACATGCAGGCAAAACACCCATATGCATAAAGTAAGTACATCTTTGAAAAGGAGTGCTTAGTGATATGCAATTGAAATGTATTTCTGTACCCACCCTGGCAAGGACGCAATCTGTTTTGAGGCGATTATGATTCCCTTGTCTAGCCCATCTGTGTGGTCTGCGTCTAGTACTCATGGGGCAATTCTTTCGGGAGGACTCTGTAACGAGACAAAACAATGGTCTTGCAGAGATAATGAAACTGGTGTCTATCCTGCACACCCCACTCACAGCCCTGCTTTTCCCCCAAG
Seq C2 exon
GATTCAGGCCACAGTCAGAAGCCTGTAGACAGTGGTGCTCCTCACGCTGTGGCTCTTCATGATTTCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028082:ENSMUST00000182666:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.626 A=NA C2=0.840
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PD(63.0=72.3)
A:
NA
C2:
PF0001823=SH3_1=PU(17.4=32.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types