BtaINT0132576 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031171 | SH3GLB1
Description
Bos taurus SH3-domain GRB2-like endophilin B1 (SH3GLB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001077993]
Coordinates
chr3:57421773-57422335:-
Coord C1 exon
chr3:57422246-57422335
Coord A exon
chr3:57421874-57422245
Coord C2 exon
chr3:57421773-57421873
Length
372 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
ACTGTAACTTTCCTTTACAGGCC
3' ss Score
11.07
Exon sequences
Seq C1 exon
TCTGAACAGGAATTAAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCAGACTTCTGCTGGAGGGAATCAGCAGTACACAC
Seq A exon
GTGAGTGTTCATTCCTTGGAAATTCATTTGGAACAGAAGGCTTTGATAGTCTTAGGGAAATTCTTGGAGTAGAAACTGAACTTCCTTTTCAGTCACTTATCAAGATACTTAAATCGTAGCATTTTTCAAGATATATGAAGAAATATTTTAAATTTTTTTTACACCTCATCACCTAGTTTTCTTACCATCAAATCCATTTGTTTTTTGTTTGTTTTATTTTTTTTTTTGGCTAAATAGTTTGTTATTATATATTGTAGTAAAATGCTAGATACTGATGATTCACCCTGAGTACAGTATTGTACTTTGTCTCCCCTTAGCATTTGCCACTTGTAGATTATAGAGCTAAGAAGTGACTGTAACTTTCCTTTACAG
Seq C2 exon
GCCCATCACCTTCGCTGTCTGAATGACTTTGTAGAAGCCCAGATGACTTACTACGCACAATGTTACCAGTACATGTTAGACCTTCAAAAACAACTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031171:ENSBTAT00000044128:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(11.8=100)
A:
NA
C2:
PF0311413=BAR=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]