MmuINT0143117 @ mm10
Intron Retention
Gene
ENSMUSG00000037062 | Sh3glb1
Description
SH3-domain GRB2-like B1 (endophilin) [Source:MGI Symbol;Acc:MGI:1859730]
Coordinates
chr3:144696854-144697467:-
Coord C1 exon
chr3:144697378-144697467
Coord A exon
chr3:144696955-144697377
Coord C2 exon
chr3:144696854-144696954
Length
423 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CCGTAACTTTTCCATTGCAGGCC
3' ss Score
9.41
Exon sequences
Seq C1 exon
TCTGAACAGGAATTGAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCCGACTCCTGCTTGAGGGAATCAGCAGTACACAC
Seq A exon
GTGAGTGTTACATCATTGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGCTGAGACAACCCCAGGCAGCTAAGGAGGAGCATGTGCAGGCGAGAGCTTCCTGTGGCATTTACCTCTCAAGGAAAGCTGAAGAGAGTTTACAAGGATCTGAAGAAATGTGTTCATTTTCTCTCACATCTCACCACACATTTTACACATTGCATAAATTTTCCTGCTGGTTTCTATTGGCTAAACAAAGTTTGTCAACATATTGTTCACCAGTAATTCATCTTAGTAAGTCTGATAGGAGTACCCCAGTAATAAGCTTTACAGTAGGTTGCCACCGCTGATTCTCCCTTGTGACAGTGTTAGCCTTTGTTCCCCTTGGCTTGTAGCACTTGAACTTCTGAGAATGACCGTAACTTTTCCATTGCAG
Seq C2 exon
GCCCATCATCTCCGCTGTCTGAATGACTTTGTAGAAGCCCAGATGACTTACTATGCACAGTGTTACCAGTATATGCTAGACCTACAGAAGCAACTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037062:ENSMUST00000163279:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=PU(45.3=96.7)
A:
NA
C2:
PF0311413=BAR=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types