GgaINT0035641 @ galGal3
Intron Retention
Gene
ENSGALG00000006284 | SHLB1_CHICK
Description
NA
Coordinates
chr8:16643242-16644288:-
Coord C1 exon
chr8:16644199-16644288
Coord A exon
chr8:16643343-16644198
Coord C2 exon
chr8:16643242-16643342
Length
856 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GAGTATTTACTACATTGTAGGCA
3' ss Score
4.1
Exon sequences
Seq C1 exon
TCTGAACAGGAAGTACGAATTACTCAAAGTGAATTTGACCGTCAAGCAGAGATTACCAGACTTCTCCTGGAAGGTATCAGCAGCACACAT
Seq A exon
GTGAGTACCCAGAAGGGGGAAAAATTAGGTAAGATCAGGAGTGTTCCTAAACACAAACAAAAAGCTACAGTAATCTATGTGGGAACTTTAGGCTACTTGCTTTCATGTAGTGCCTTAAAAAACATATCTATTGGATGGTTTATTTTTTAACTGTTCTTTAGTACCCATTGAATTAATGTTGTTTTCCCTTTAACCGTGATCTCTGGTGTTTTCATTATTACCTTTTGTATGGGAACTGTTGAATCACGGCCTGAACCTCTGATTGATCACCTGAGGCGAGCACTGAGTCAGCTGTGGGAGCACAGGTGAAGGCAATTCACCTGTGTGACTGGAAGGGGTGGAGCCTGGCTCCTCCTCTCCTAGACCCCGTTGAAGGGCTGACTGCCACTGAGGAAGGATCTCTTTCTGGAGATCACTCCTCTTGGAGTTTTTCCTGTGAGCCTACAACATGGGTGAGCATTTTCATTTATTTTCTAATTATAATCTTTCTAGCTATATACTATCTGTGGATACTAATCTAACCACACTGCTCTGTATATTTGTTGATGACCTTTCAACATCATTTTCAATTTATCTGATCAACTGATTATTGAAACCACAAAAAATATGCTTAAATAACCTGTTGTGGAAACAGTATAGATAAATGGCATGATTCTTATACTGCACTTACTTTTGGTGCTCAAATATGTTGATTTTGGGGCACTTTATCGTAGTTACCTGGTAAATCCAGGCATAGTGCCTATATGGGATGAATACTAATGTACTGATGTTAGCCTTACCAACCTGTTTAATAGGCTGGTGTTTGTAATGCAGTGTAAAATGCAAGCTAAAAACTTGAGTATTTACTACATTGTAG
Seq C2 exon
GCACATCATCTCCGCTGTCTCAATGACTTTGTTGAAGCTCAGATGACTTATTATGCACAATGTTACAAGTATATGTTGGATCTCCAGAAGCAACTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006284:ENSGALT00000010151:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(11.8=100)
A:
NA
C2:
PF0311413=BAR=FE(13.4=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAACAGGAAGTACGAATTACTCA
R:
CAGTTGCTTCTGGAGATCCAACA
Band lengths:
186-1042
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]