HsaINT0149362 @ hg19
Intron Retention
Gene
ENSG00000097033 | SH3GLB1
Description
SH3-domain GRB2-like endophilin B1 [Source:HGNC Symbol;Acc:10833]
Coordinates
chr1:87200285-87200862:+
Coord C1 exon
chr1:87200285-87200374
Coord A exon
chr1:87200375-87200761
Coord C2 exon
chr1:87200762-87200862
Length
387 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
ACTATAATTTTCCTTCACAGGCC
3' ss Score
10.51
Exon sequences
Seq C1 exon
TCTGAACAGGAATTAAGAATAACTCAAAGTGAATTTGATCGTCAAGCAGAGATTACCAGACTTCTGCTAGAGGGAATCAGCAGTACACAT
Seq A exon
GTGAGTATTCATTCATTGGAAATTCATTTGGAACAAGACTTTGGTAGTCCTAAGGCAATTTTGGGAGGAAAAACTGAACTTTTCAGTCATTCATCAAGGAAATTTAAATTGTTCTACTTTCCAATATATCCGAATAAATATTTTAAATTGTTGTTTACATCTTATCACCGAGTTCTCCCACCCTCATTAAATATACATGTTGTTGTTTATTGGCTAAGCAGAGTTTGCTAGTGTACTATTCACGAAGGCCAATCTTAATAAGCCTTGTAGTAAAATGTTAGATACTGGTGAGTCTACCTCAGTACAATATTGTGGTCTGTCTCCCCCTTGCATTTGCCATTTAAGTTGACTATACAGCTAAGAACTAACTATAATTTTCCTTCACAG
Seq C2 exon
GCCCATCACCTTCGCTGTCTGAATGACTTTGTAGAAGCCCAGATGACTTACTATGCACAGTGTTACCAGTATATGTTGGACCTCCAGAAACAACTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000097033-SH3GLB1:NM_016009:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(11.8=100)
A:
NA
C2:
PF0311413=BAR=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)