HsaINT0149362 @ hg38
Intron Retention
Gene
ENSG00000097033 | SH3GLB1
Description
SH3 domain containing GRB2 like endophilin B1 [Source:HGNC Symbol;Acc:HGNC:10833]
Coordinates
chr1:86734602-86735179:+
Coord C1 exon
chr1:86734602-86734691
Coord A exon
chr1:86734692-86735078
Coord C2 exon
chr1:86735079-86735179
Length
387 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
ACTATAATTTTCCTTCACAGGCC
3' ss Score
10.51
Exon sequences
Seq C1 exon
TCTGAACAGGAATTAAGAATAACTCAAAGTGAATTTGATCGTCAAGCAGAGATTACCAGACTTCTGCTAGAGGGAATCAGCAGTACACAT
Seq A exon
GTGAGTATTCATTCATTGGAAATTCATTTGGAACAAGACTTTGGTAGTCCTAAGGCAATTTTGGGAGGAAAAACTGAACTTTTCAGTCATTCATCAAGGAAATTTAAATTGTTCTACTTTCCAATATATCCGAATAAATATTTTAAATTGTTGTTTACATCTTATCACCGAGTTCTCCCACCCTCATTAAATATACATGTTGTTGTTTATTGGCTAAGCAGAGTTTGCTAGTGTACTATTCACGAAGGCCAATCTTAATAAGCCTTGTAGTAAAATGTTAGATACTGGTGAGTCTACCTCAGTACAATATTGTGGTCTGTCTCCCCCTTGCATTTGCCATTTAAGTTGACTATACAGCTAAGAACTAACTATAATTTTCCTTCACAG
Seq C2 exon
GCCCATCACCTTCGCTGTCTGAATGACTTTGTAGAAGCCCAGATGACTTACTATGCACAGTGTTACCAGTATATGTTGGACCTCCAGAAACAACTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000097033:ENST00000370558:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(11.8=100)
A:
NA
C2:
PF0311413=BAR=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains