BtaINT0134524 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24750959-24752463:+
Coord C1 exon
chr2:24750959-24751040
Coord A exon
chr2:24751041-24752304
Coord C2 exon
chr2:24752305-24752463
Length
1264 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATTGTTTGTTTTATTTGTAGCTG
3' ss Score
7.65
Exon sequences
Seq C1 exon
CAATCTCATGGTTTAGGCAGGCCTATCTGGCTCCAGATTGCCGAGTCTGCTTACAGATTCACTCTGGGCTCAGTTGCTGGAG
Seq A exon
GTGAGTGACATGTCTGTGTGCCGTTTCAAGCTTGTGTTCATGTAATATTATCTCACTAGACTGGGACAGATCAGCAAAGGTGCAGTTCATTGTTCGCAAGGGTCACGAGTTCAGGGCTTTCTGAAGTGTTCTTTATTTTAACCTATGATCAGAGGACTTGTCATAGCACAGCCACAGCCCCTGTGGCTCCAGTCTGTCTTCAGGACGAAAGCCTCTGGAGTCACGTGGACATCTTGGCTGCGTGTGCATTCCGCTGGTTATCATGGGTAAAGCCAGTATGAAGACGTGGAGACTAAGACTGTTTTTTGGTGTTAGGAGTGAGGGAAGGTGGGAAATCAAGATTTGGGGTACAAATCCCAGACGCTTAAGAAATAAAAGAACCTCTTAAAGTGATTGACTTTTGCTTTTCTGCTTGTGTTTGGCGTCTTGCTTTTTCTTCCCCCTTTCATCTTTTGTTGGTTGAAGAATATCTAGACTTGTTAGTGATTTGCTAAAATGAACCTCCCTTCTCTGCTCTTGGGCAAAATTTAACAGGCCTTTTTTTTTTTCTGGCTTAATTCTCTCCATAGAATATGTGTAAAACCTGAAGTTGCTTTGTTGAGAAGAACCTAGTAGATGTGATTAAAATACTTAGGATTTTTCAAAACAAGCCTGAACTAATGAAACTATTATTTTTTCTTTTCAGTCTCAGTTTTAGAAGTTGCAAAGCATGTTTTTGTTTTCAACAGTTGAGAAATTTAATACTCTAATTCATGTTATGAATTTTTTAGTGCCTGAGATAGTCTGAAGCATGGCCTTTAAAAAAAAAACAAAAACTGGGTTCTTAATAGCTGTAACTAAGGTCAATTTACCAAAGTGCTGTAGTAAACTAAATTGTAAATTTATAGCCACTTCTGTGTACATATGTAGTTATTTTAAGGGGTAACTGGTATAATATATGGACACTTATTGGAACATATAAAGAAATATGTTATATATAATAGTTTAATGTTAAAGAAAATTGAGTGTTGACTAATGTTGGTGACAACTTGAAAATTCGCTACCATTGTTCTCTGTAGCAGCTGTATTTATGGGTCCCAGTAGTTGCTAGCCTCTGATCCTTCAGCTGTGTATGAAAGAAAGAAAAACTATAGAAAGTCTCTTTTGTGAGAATAGATACTGTGTTCTATTTCCTAGTCCTCTGAGATGAGATTTGTTGTCCTTACAGATTCTCCATTTAATTGTGCTCTCTTTTAAGCCTAAAAATTGTTTGTTTTATTTGTAG
Seq C2 exon
CTGTGGGGGCCACCGCAGTATATCCTATAGATCTGGTGAAGACCCGCATGCAAAACCAGCGTGGCACCGGCTCTGTTGTGGGAGAGCTGATGTACAAAAACAGCTTTGACTGTTTTAAGAAAGTCTTGCGTTATGAGGGCTTCTTTGGACTCTACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762:ENSBTAT00000022292:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=50.0)
A:
NA
C2:
PF0015322=Mito_carr=FE(54.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCATGGTTTAGGCAGGCC
R:
CCGGTAGAGTCCAAAGAAGCC
Band lengths:
238-1502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]