RnoINT0136805 @ rn6
Intron Retention
Gene
ENSRNOG00000022922 | Slc25a12
Description
solute carrier family 25 member 12 [Source:RGD Symbol;Acc:1305181]
Coordinates
chr3:57901095-57903028:-
Coord C1 exon
chr3:57902947-57903028
Coord A exon
chr3:57901254-57902946
Coord C2 exon
chr3:57901095-57901253
Length
1693 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AACTGTTGTTCTGCTTGTAGCTG
3' ss Score
7.06
Exon sequences
Seq C1 exon
CAATCCCCCGGCTTGGGCAGACCTATCTGGCTCCAGATTGCCGAGTCTGCATACAGGTTCACTCTGGGCTCAGTGGCAGGAG
Seq A exon
GTGAGTGGCGGCTTATCTGTGGCTGCTTCAGGCTGGTTTTGCTGTAACATTATCCCAGCAGATGGGACGCAGTGAAGGTGCAGTTCACCGTTCCTCAGGGTCAGGACTGCGGGGGCTTTCTGAGGATTCTTTATTTTTTACCTGTGATCAGAGGGCTTGTCATAGCACGGCTGCGGCCCTCTGGCTCCAGCCTGTCTTCAACGTTAAACCTCTAATGACGGGAGAGTCTGAAGGGCACCACTGCACTCTCTCACCTTAATCATATCAGGTAAGGCCAGAGTGAAAGATGGAGACGAAAAACCTGAGTTTATGGGGTCAGGCTAGGGGCAGGGTGGGAGCCGTGATCTGAGATGCCAACTGAGAAACTCATGAAATAAAGCCAACGCCCACAGAGAATCACAGTGGCTAGCTCGTGACTTTTCTCTCCTTTGTCTGGCTTAAAAGTGCCCAGAGATGTTGTTAATGTGCTAAGAAGAATCCCTCCTCCCCTCTCTGCTCACAGAGAGTCTATTAAAAGCTTCTCGTGTATGTGTGCGCGCATGCTCGCGTGGGTCACGGCATGCGTGTTGAGGTCAGAGGGCAACCTGACCGTAGTTGGTTCTCTCCTCCCACTGTGTGGGGCCCGGGACTAAACTCAGGTTTTCACACTCGACAGCAAGCACCTTTGCCTGCTGAACCACGTCACCAGCCTGGGACTATTTTTACTTAAATGATCTACAGAGAAAATTGAAATCACGTAGTTGAGAAGAAATCTCCAAAAGATATTTAAATGCTCCTGAGTTTTCAAAACTAGCTGGAACTGGTGCCTAGTATTTTTTTTTCTTCTAGAAGGTGCCAAGAACGATCTGCTTTCAGCAGCCAAAAAAATAGAACACTGCAGATCCTGTAAAATATTTCAGTCCCCAAGGAATCCTAAAACATGACTTTAGGCTTTTGTTTGATTTGACGTTCAACCAAATTCTATACGTGGGGATAGGATCCCATCAAGGATGCCTCCCCAAGGGGTGGTTGTTGCTTAGATTTACCAGAATGCTTCAGGGAACTACGCTCTAAAATCATAACCCCTTAGCTTCCATGCTGTCATTTCATCATTACGAAGAAGGAGCAGGTGAAATATTTAGGCATTTCATATAAGAAATGGTTCGGGTGGGCTGTGGTTGCACATGCCTGTAACCCCAGCAGAGGTGGGCTGATGTCTGTGAGTTCAAGGCCAGTGTGGTCTACAGAGTGAGTTCTAAGATAGCCGGGGCCAGGGAACCCCTGTCTAGAAAAAGAAACCAACAAACAAAACAAACGAAAGAAAGAGTAAAGAGGAATGGTATCCATAGATAATTGTTTACTGTCCCTAAAAGATACTGATGTTCTAAGGTTGGTTGGTGATGATTGGAAAATCTACTGCCTAACTCACATGTAAGATATCAAAGATTTTTTTTAGGACATTCTAGGTAAACGCTCTACCACTGATCGTTGTCGCTTGAAGCAGCTCTTTCTGGGCCCTGCTGCTTGCCATTCCGCCATCTTTTGGCTCTAATAATAAGAGAAGGAAACCTGTGATAAGATGAGAGAGAGCCTTCTGTGAGACTAAGATACTGTGCTCTATTTTTCACCGGTGGAGATGAGATCTGATGCCCTTAGGGACACTCCATTCAACTGTGTTCCTTTTGTCAAACCTAAACTGTTGTTCTGCTTGTAG
Seq C2 exon
CTGTGGGGGCCACTGCGGTCTATCCCATAGACCTGGTGAAGACCCGGATGCAAAACCAGCGCGGCACAGGCTCTGTGGTCGGGGAGCTGATGTATAAAAACAGCTTTGACTGTTTTAAGAAAGTGTTACGTTATGAGGGTTTCTTTGGACTGTACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022922:ENSRNOT00000036728:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=50.0)
A:
NA
C2:
PF0015322=Mito_carr=FE(54.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTTGGGCAGACCTATCT
R:
CGGTACAGTCCAAAGAAACCCT
Band lengths:
231-1924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]