MmuINT0145454 @ mm9
Intron Retention
Gene
ENSMUSG00000027010 | Slc25a12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Coordinates
chr2:71134722-71136708:-
Coord C1 exon
chr2:71136627-71136708
Coord A exon
chr2:71134881-71136626
Coord C2 exon
chr2:71134722-71134880
Length
1746 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AAAAATTGTTCTATTTGTAGCTG
3' ss Score
6.28
Exon sequences
Seq C1 exon
CAATCTCCTGGCTTGGGCAGACCTATCTGGCTCCAGATTGCCGAGTCTGCATACAGGTTCACTCTGGGCTCAGTTGCTGGAG
Seq A exon
GTGAGTGGAATATCTGTGGCTGCTTCAGGCTGGTTTTGCTGTAACATTATCCCAGCAGATGGGACAGCTCAGCAAAGGTGCAGTTCACTGTTCCTGGGGGTCAGGACTGTGAGGCTTTCAGAAGATTCTTTATTTCTACCTGTGATCAGAGGGCTTGTCATAGCATGGCTGCGGCCCTCTGGCTCCAGCCTGTCTTGAGCGTAAAACCTCTGTAATAATGGGAGAGTCTGGAGTGCACTGCTGTACTCCCCCTCTGTAATCACATCAGGTAAGGCCAGCGTGAAAAATGGAGATGAGAAAACTGAGTGTATGGGGTCAGGCTAGGGGCAGGGTAGAAGCCAAGATCTGAGATGCAAACTGAGAAACTCATAAAATAAAACAAAAATCCACAGAGAATCACAGCGTCTGGCTTGTGATTTTTCTTTCCTTTTTCTGGCTTAAGAGTATCCAGATATGTTGTTTATTTGCTAAAAAGAATCCCTCCTCCCCTCTCTGCTCATAGAGAGTCCATTAAAAAGCTTTCTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCACGCGCGCACACGGGTCACTTCGGGCATGTTAAGATCAGAGGGCAACTTGGCCAGAGTTGGCTCTCTCCTTCCACGGTGTGGGGTCCAGGGATTAAACTCAGGTTGTCACACTTGATGACAAGCACCTTTGCCTGCTGAGCCACCTCACCAGCCTGAGACTATTTTTACTTAAATTATCTACAGAGAAAATGTATAGAACTTGAAATCACTTAGTTGAGAAGAACCTCCAAAAATATTTAAACACTCCTGAGTTTTCAAAACTAGCTGGAACTGGTGCCCAGTAATTTTTTTTTTCAGCCTCAGTTTTAGAAGGTGCCAAGAACATACTGCTTTCAGCAGCCAAAAAATAGAACACTCTAAGTCCTGTGAATTACTTCAGTTCCCAAGGAATTCTCTAGCATGACTTTAGGCTTTTGTTTGATTGACTTTCAACCAAATTCTATACATGGGGATAGGATCGTGTCAAGGACTCCTCCCCCAAAGGATGGGTGTTGCTTAGATTTGCCAAAATGCTTCAGTGAATTAAACTTTAAAATCACAACCTCTTAGCTTCCTTAGCGTCACTTCATAGTTGTGAAGAAGGAGCAGGTGAAATATTTAGGCGTTTAATAGAAAATGTAAAGAAGTGATACAGGTGGGCTGTGGTTGCACATGCCTGTAATCCCAGCAGAGGTGGGCTCATCTCTGTGAGTTCAAGGCCAGTATGGCCTACAGAGTGGGTTCTAGGAGAGCTGGGGCCAGAGAAACCCTGTCTAGAAAAAGAAACCAACAAACAAAACAAACAAAAGAAAGAGAAAGAAAGAATAAAGAGAAATGGTATCCATACATAATTGTTTTATGTCACTTAATGAAACTGAGAGCTGGTGTTCTAAGGTTGGTTGGCAATGATTTGAAACTCACTCTCTTAACTCACACATAAGACATCAAAGATTTTTTTTTTTTGGACATGCTAGGTAAACACTCTACCACTGATTGTTGTCCCTTAAGCAGACCCGGTTGCTTGCCATTCCACCATCTTTTGGCTCTACTAATAAGAGAAGGAAACCTGTAAATAAGATGAGAGCCTTCCGTGAGACTAGATGCTGTGTTCTATGTTTCGCCTATGGAGATGAGATCTGATGCCTCAGGGACGCTCCATCTAATTGTGTTCTTTTGTTAAACCTAAAAATTGTTCTATTTGTAG
Seq C2 exon
CTGTGGGGGCCACTGCGGTGTACCCCATAGACCTGGTGAAGACCCGGATGCAAAACCAGCGTGGTACGGGCTCTGTGGTCGGGGAGCTGATGTATAAAAACAGCTTCGACTGTTTTAAGAAAGTGTTGCGCTACGAGGGTTTCTTTGGACTGTACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027010-Slc25a12:NM_172436:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=50.0)
A:
NA
C2:
PF0015322=Mito_carr=FE(54.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCTCCTGGCTTGGGCA
R:
CGGTACAGTCCAAAGAAACCCT
Band lengths:
239-1985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: