HsaINT0151624 @ hg19
Intron Retention
Gene
ENSG00000115840 | SLC25A12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:HGNC Symbol;Acc:10982]
Coordinates
chr2:172669849-172671712:-
Coord C1 exon
chr2:172671631-172671712
Coord A exon
chr2:172670008-172671630
Coord C2 exon
chr2:172669849-172670007
Length
1623 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AAAAATTGTTCTGTTTGTAGCTG
3' ss Score
6.44
Exon sequences
Seq C1 exon
CAGTCTCCTGGGTTAGGCAGGCCTATCTGGCTCCAGATTGCCGAGTCTGCTTACAGATTCACTCTGGGCTCAGTTGCTGGAG
Seq A exon
GTGAGTGACATGTCTGTGTGCTGTTTGAGGCTTGTGTTAATGTAATATTATCTCACCAGACTGAGGCAGATCAGCAAAGGTGCAGTTCATTGTTCCCATGGGTCACGACTTCAGGGCTTTCTGAAGTGTTCTTTATTTTTACCTATGATCAGGAGACTTGTCGTAGCAATGGCTATGACCATCTGGCTCCAGTCTGTCTTCAGGACAGAACCTCTGTAATGATGTGAAAGTCTGGGATGCAGTGCTGCACTCACCTTAATTATACTGGCTAAGGCCAGTATGAAAAAATGGAAAATGAGACTGTGTTTATGGGACAGGTTAAGAAATTGAGATTCGCTATTATCCTTAGCAAACTAACGCAGGAACAGAAAACCAAATACCACATGTTCTCATTTATAAGTGGGAACTAAATAGGAGCTTATTATGAACACAAAGAAGGAAACAACAGACACTGGGGTCTACTTGTGGGGGAGGGTGGCAGGAAGGAGGGGAGCAGAAAAAATGACTGTTGGATGCTGGGATTAATACCTGGGCGATGAAATATGTACAACAAACGCCCGTGACACGTGTTTACCTATGTGACAAACCTTCATATATACCCCACACCTAAAATAAAACTAAAAAAAAAAAGAAAGAAATTGAGATTTGGGATATGAATCCCAGAACCTCGTGAAATAAAAGAGCCTCTCAAAGTGACCCAGTTTTGCTTTTCTGCTTGTATGTTTTCCTTTCCCTTATCGCTTGCTTAACAATATCTGGACTTGATGTTTATTTGCAAAAATGAACCTCCCTTCCCTCCCTGTTCACAGCCAAAATTTGAGAGACTGTTTTTGCTTAAATACTCTACTTAGAAAATGTGTACAATCTGAAGTTGCTTTGTTGAGAAGAAGCTAGCAGGTGTGATTAAAATGCTTACGATTTTTTAAGATAAGCCTGAACTCAAAAGACTTTTTTTTTTCTTTTCACTCTCAGTTTTAGAAGTTGCAAACCAGGTTTTGGCTTTCAGCAGTCAAAATGTGTAATACTCTCGTTCATGTAAATAAATTTTCATTCCCTGAGAAATTCTAAAGCATAGCCATATTTTCTTTTAAACCAAATTCTATACATAGGGATAGGATAATGTTGAAGTGTGTTTCTAATATTATGGTTGTAACTATGATTAATTTACCAAGATGCTTTATTAAACTAAATTTTAAAATCGTAGCCACCTAGTGTACGGATATAGTCATTTTAAGAAGTAACTGGCATAATATTTAAGCATTTAATGGAAAATATAAATAAATGTTATACATAATAGTTTAATGTTGTTACTATAGAAAACTGAGTGTTGATTATCTAATTTGGGAAGTGACTCGATAATCCACTCTGTAGTTTATGAACCTACGATATCAAAGAGCATTCTTGACAGTTGTTTTCTGAAGCAGCTGTATTTATGGATTTCAGTGCTTGCTATAGCCTGCTATCCCTAAGGTGTTTGTGAGGGAAAGAAAAATAATAAACTCTCTTTTGTGAGAATACATGTTGTGTTTTATTTTCTCATCCTTTAAGATAAGATTTGTCATCCTTATGGACTCTCCATTTAATTGTGTTCTTTTTTAAGCCTAAAAATTGTTCTGTTTGTAG
Seq C2 exon
CTGTGGGAGCCACTGCAGTGTATCCTATAGATCTGGTGAAGACCCGAATGCAAAACCAGCGTGGCTCTGGCTCTGTTGTTGGGGAGCTAATGTACAAAAACAGCTTTGACTGTTTTAAGAAAGTCTTGCGTTATGAGGGCTTCTTTGGACTCTACAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115840-SLC25A12:NM_003705:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=50.0)
A:
NA
C2:
PF0015322=Mito_carr=FE(54.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTCCTGGGTTAGGCAGG
R:
CCTGTAGAGTCCAAAGAAGCCC
Band lengths:
240-1863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)