GgaINT0049673 @ galGal3
Intron Retention
Gene
ENSGALG00000009545 | F1P3D8_CHICK
Description
NA
Coordinates
chr7:19364700-19365417:+
Coord C1 exon
chr7:19364700-19364784
Coord A exon
chr7:19364785-19365258
Coord C2 exon
chr7:19365259-19365417
Length
474 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCCGAATGCTTTCTCACAGCTG
3' ss Score
6.91
Exon sequences
Seq C1 exon
CAATCGTTTGGAGAGTTAAGCAGGCCTATCTGGCTCCAGGTAGCTGAGTCAGCCTACAGGTTCACTTTGGGCTCAATTGCTGGAG
Seq A exon
GTGAGTAATTTGTCTGCATTTCAGGCCTGGGTTTGTAGTCTTTCTTGCCAGACTCTTTGGGACCATCTAAGGTGCACTTTCTTGGTTATGCAGGTGAAGCATTGGAGGGTGCAGCCACTTCTGGTTGTGTCACTCTCGCTTCCTTATCCCTTCTATTCTAGTACCCGTTTAGGAACAACTGAAACTGTACTCACTTGAGAAAGACAGTTGCTTACTGATAGTTCTTACTGCTGCTTTTTCTGATTGGTGTTCTTTGTTCTCTACAACTTGTTCTATATAATACATAATAAATTCATTCTCCTGGAGACTTTTTTCTAGATTTTCAGTATTGTTCTTACTTCCAACATCTCAGAGATCTTACCAGCTTGTATATATCTGTGTGTTGAAATTACTGTTAAAGAAAGTCACCATAATGATTATGTACTACACCAACAGAGAAGCTGCAGAAGTAATGCTCCGAATGCTTTCTCACAG
Seq C2 exon
CTGTTGGTGCTACGGCAGTATATCCCATAGACCTGGTGAAAACTCGTATGCAGAATCAGCGCTCCACTGGTTCAGTCGTAGGAGAGTTGATGTATAAAAACAGCTTCGACTGCTTTAAAAAGGTTTTGCGTTTTGAAGGCTTTTTTGGTCTTTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545:ENSGALT00000015535:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(15.2=51.7)
A:
NA
C2:
PF0015322=Mito_carr=FE(53.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCGTTTGGAGAGTTAAGCAGG
R:
AAAAAGCCTTCAAAACGCAAAACC
Band lengths:
230-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]