BtaINT0134636 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003752 | SLC25A24
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 (SLC25A24), mRNA. [Source:RefSeq mRNA;Acc:NM_001099066]
Coordinates
chr3:35206762-35210446:+
Coord C1 exon
chr3:35206762-35206912
Coord A exon
chr3:35206913-35208368
Coord C2 exon
chr3:35208369-35210446
Length
1456 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTTTTTTTGAATTTTCTAGCCA
3' ss Score
7.9
Exon sequences
Seq C1 exon
CTCCTAAAGTCTCATTGGCTAGATAATTTTGCCAAAGACTCTGTGAACCCTGGAGTCATGGTGTTGCTGGGTTGTGGTGCCTTATCTAGTACCTGTGGTCAGCTGGCCAGCTACCCCTTGGCTTTGGTGAGAACACGCATGCAGGCTCAAG
Seq A exon
GTGAGTTTTGAATGAAAGCAGGACACTGCTTTAAAAGCATGGCATCAATAACATGCTTCTGGAACTCTCAAGTTCCACTGAGACAGCAGAGTGTGGTTTTAAGATAATATTTCTTAACCACTTTTTTATGTTATTGCCTCCCTAAGGGAGCTTTTTAGAAATTCTTTTCTAAATCAGTTCTTCTTCATGAAATCTTAATAGCACAGATACACTATGCATATACTGAATGTGTATCTGTGGCTTCTGCACAAATGAGTAAGATTTTCTTGCTTATGTTGGGAATGCATGTTTTAAGAGTACAGTTGGCTGTCCCCATTCATGGGCTCTGCATCTGAGGATTCAACCTACCATGGATTGAAAATACTCAGGGAAAAAACTCCCAAACTCCAGAAAGTTCCAAAAAGTAAAATGAGAATGTGCCACGCAGTCCACTATTTACAAATCATCTGCATTGGAAGTGTTGGTTAATTAATGATTGACTGCTTGGCTGGGGGAGGTGTGGCTGGTACTTGGAAGAGAGGTTGAGGATAGAGGTACAGATGTTCAGGGTGTACTGTTTAAAGAAATGATAGTGGATGAGATAGGCCAGGGATAAAACAGAAAAGAGAGGCACAGAATGCATGCTATTTAATATAGCAATGCAATGCATTCATGTGTGTGTGCTCGGTCGTGTCTGATTCTTTGTGACACCATGGACTGTAGCCCTCCAGACTCCTCTGTCCATGGGATTCTCTAGGTAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCTGGGGGGGAATCTTCCCAACCCAGGATCAAACCTGCATCTCTTGCATCTCCTGGATTAGCAGGCAGATTCTAGTCAGCAAATTGTGAACAAAGAGAACAATTAGTGAGATGACAGGAGATCCAGGAGGCATGGTGTAATCAAAGTCAAGGAGAGAGTGTCACAGTGGGGAGGAGTCACAGTTCAAAAGTTTTAGGTCCCATAATAATAAAAACTCTAGCCACCATTTACTGAGACTTTGACAAATGCCAGCTGATTTACATAGTTGTTACTGATTCTTACAACACCGTACAGTTTTCATTCCATTTACAGAGAAGAAAGACCATCAGCTGTCAGCTCTCCCACTTGCTGGCTGAGTGTGTTGAGACAAGTTTCTCTATCTTTCTAAGATTCCTTACTTACTAAATGGATATAATAACTCTTACCTTGGAGGATTGGTATATCAAGTCATTAACCCAACATCTAACACAAAGTGATACTACCATTGTTATTCTTACCAGAGCACTCACTCTTAGGTGCTACCCAGGGAGAATTATATAAAGGGGCACTTTTTGAGGACCCTTGGAATAAATTTTATCTGTTTATTGTATTCTAGAGTATCATTCTGAATCATAATTGTATAGTCATAATAAAATGTGTGAATATTAAATTAGCCTGATTTCTTTTCTTTTTTTTTGAATTTTCTAG
Seq C2 exon
CCATGATAGAAAAAAGCCCACAGCTGAACATGGTTGGGCTCTTTCGACGAATACTTTCTAAAGAAGGACTACCAGGACTTTACAGAGGCATCACCCCAAACTTTATGAAGGTGCTCCCTGCTGTAGGCATCAGTTATGTGGTTTATGAAAATATGAAACAAACTCTAGGTGTGACTCAGAAATGACATGTTGAATTTTTTGCTTTGGCATGATTACTGAAACTTTCAGCCGTCTCCAGAGTGATGTTTTCTCCTAGAATTGAAACAAATCTATGGCAAAAAGAAGCTTTATTTTTTTTTTCCCACAAAAAAGAAGAGCATATCAATGATAATTTCAGACATTTGGACTCAATTTTACATATTCAGAAATGTCTAAAAAGATCATAGTTTTGATAAGCTCATACAATTTTGAGAAAGCCACAAAATTATAGTTTATCTTTTCTTATTAGTTCTTTCTACAATCTCTGCCAGAATCCTAAATCTGAAGAAATGTACTTGCTTGAACTAAATTTGCTTTGTGTGCTAGAATTATAAATCTTTCCTCTTTATTTTGGTTGGTTCAAGTTTATGTCCGTTCCTTTACACTTAAATATCATTTTCTTAAAAACAAAATGATCAGAAAACTTGGAAACTTAAATTGTTCATATATTTTGAATTTCTTAAAATCTCCTTGTAGGATCATTAATGGAGAATCATTACATGAAAACATACCTTACAGCAGCCAAATACTTATAGAGTTTATATTCTTTCTTCAAGCAGAATAAGAATAAACATTAAATGGCAGAATTTCAAGGCATGTGAATACCCTAGTCCACTCATATAATTTTTGTGTAAGGAGGAGTGATAAAATCATATTTATTTCAGTGACCACTTCTCCATTTTGCTTGTACTGTTGTTTGGTTTTCAGGACAACACACTGATTATTAGCGTATCACTGGTAAATTGTCCACACAGGGCAACTTATTTGAGAGATTCTGTTCATTATCATTGTTTTGAAAAGCATCAGGAAGCAAAACCCCTTTACTTATATCCGTCTCTAAAGAGCATCTCTCTTCTCTTTGTCCTTTGTCTCCTACTTGAATCAAACTCCTGTTTTCACCAGAAAGGCTTCTGGAGGCCATTCCCGATTATCTGAAATTTCTTAATTACGTGAAGTAGGTTGATCATGGGTGAATGGCATTCTCATTACCCCCTCACCATTTATTTGACCCTGCAATTCTCAACTTGGGCAGTGCAAACCTAACAGAATAGTATGTATTAAAAATAGTCTAGATTAATTCTGCATATTTGGTGCCTATAATGAAATGGAAGGCCCAGTTTACAAACAAGTACATTCATATTTTGTCTTGCCCCCAGTTTTAGGAACATGTTTTGATTTAGAAAACTTAAAATGGAGCGAGAGCATGATTTTATTTTACTGAAGCCATTTTTTTATAATCAATCATTTTTTTCTGATTTGTGTGATTAGGACTTAGACAACTATTTAGTAGTTGAAATTATTCGTATCACTTTTCAGTGTAATTCTTAAACTCAAGTTTGATTTCTAGTAATTTCTGTCATAAATTGCCAACGTTTTAATGAAAATCTGGTGACATAATAGGCATTTACTTTATTTGAACCTACCTCTCATGTTTTCTAAACCAAAGAGAAATGTTGAACTTGTGTTTGTGAAACGTATCCTAACATATAGTTTTCATTATATTTGTTATGCCTGATAAATATCTCAATGTTTTTATAATACATACAATAAGTGTGAAAGTCTGTCTTCAGGGTGTTTGTACTTTTGAGTAACGCATAAATGACAATATTAATGTACTAGATTAACTCTTTTTTCACTCATAAAATTATGGGATGAGTAAAATTTCAGGCTACTGAAAAAATTCATTGTTCATTATGAATTTAAATTGTTTTCTATTTAACATTTGTAAGGTATGAATGTGATTTATCTGTGTATCTTGTATCTTTTGAAAAAATCTTGTATTTTTTGAAAAGAGCCCAGAGTCAAGAATAGTTTATTTCTGGCATTACTGCATATTTGCTTTACATTTATAATTAAAAATACATATATGTTTGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003752:ENSBTAT00000004885:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
A:
NA
C2:
PF0015322=Mito_carr=PD(61.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCCTGGAGTCATGGTGT
R:
TCACTCTGGAGACGGCTGAAA
Band lengths:
351-1807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]