HsaINT0151753 @ hg38
Intron Retention
Gene
ENSG00000085491 | SLC25A24
Description
solute carrier family 25 member 24 [Source:HGNC Symbol;Acc:HGNC:20662]
Coordinates
chr1:108134036-108139208:-
Coord C1 exon
chr1:108139058-108139208
Coord A exon
chr1:108136838-108139057
Coord C2 exon
chr1:108134036-108136837
Length
2220 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
CCTCTTTTTTTATTTTTTAGCCA
3' ss Score
9.36
Exon sequences
Seq C1 exon
CTCTTGAAGTCCTATTGGCTGGATAATTTTGCAAAAGATTCTGTAAACCCTGGAGTCATGGTGTTGCTGGGATGCGGTGCCTTATCCAGCACCTGTGGTCAGCTGGCCAGCTACCCATTGGCTTTGGTGAGAACTCGCATGCAGGCTCAAG
Seq A exon
GTGAATTTTTGATTACAGAACCACACCGATAAAAGTGCTGCACCAGTAATGTGCTTTTAGAACTCCAAGTTCTACTAAGATGCAGACTGTAGTTTTAAGACAGTATTTCTCAACCTTTTTTTCATTATTGCCTCCTTAAGGAATCTTTTCAGAAATTCTTTTTCTAAATGCTCCCTCGTCATGAAATTTTAATGCGACAGAAGCATTGCATATGTACTGTATGCATACATATGCCTTATAGATAAACAGAGTACTATTTTTTTTGACTGTGTTACATGCACGTTTTAAGATTATAAGCTTTAGTATCTGATGGATTTGGGTTCAGATCCTTGCCTCAGACTTCTTGGGGTTTTTAATGGGAATGAAAATTGTACAGTGTTGTAAGAATTACCAACAATATAAATAAAGCATCTTGGGTTTGTTAAATTTTTGGTAAATGGTGGTTGGAATCATTTTTTAGTGTTGCGTAGACCCTACAAGTTTTGAGCTGTGATTCCTCCTCACTGTGACAGTCTCCATTGTTGGCTTTGATTACACTGTACCATCCTGGTTGTTCTGCCAGCCCATTGATAACTTTTACCATTTGCTGGCTTTTATTGCTATCCCCACTCTATTAAAGTATGCATTCAAATGCCTTTCTTTTCTCTTTGATGCTTTCCCTGGTCAGTCTTATCCATTGTTTTCTTAAGTAGTACACCTTGGGCATCTACAGCTCTATTCCCAACCTCCCTTCCAAGTGCCAGCCACAGCAACCCCAGCCAAGCAGTCAGTAACTAATTGGCAAATACTCCCTGAGCCATTGTCCCATTCTAGACACTGCCAGATGCTAGGGGTAGAGCAGTCAACAAGTCAGGTGTGGCCCCGCCAGTGTAGAGTAGAGAAGACGTTATGTCCAGCAAGTAAACAACCTGGTTAAACCAACTCCTCTTTTGTTAGGGGAGCACAGAGCAAGGAGCTATAACCTAACTTGGGCGCTGCAGAATGCTGTCAGTGAAGCTGAGACTGGAAAGATGAGTGGGAGTTAGCTGGGCACAGGCCAGTGGAGTGGGAACAGAAAACATTCCAGTTGAGGGAAAGCATGTGTGAAGACACTGAGGCAGGCACCAACATGGTGTATTTAAGGAGCTGAGAGACAGTCATGGCTGTAGAGAAAAACACAAAGTAGTGAACTACACGTTTCTTGTGTATTCTCTCATTTCACCATCATAACCATCTTGGGGATGGGAATACTAACATTATCCCCATTTTTCAGATGAGCAACTGGGGCAGAGAGAATTTAAGTAACTCCCACAAGATTATACCTGTGGTAAATAGTGGGACTGAAATTCAGACACATGCAGTCTGATTCTAACCCTCCTGTCTGCCAGCTCTGATCCAGAACTTTGCATGACTGATACGGCTGATAGATTGTCTATGGCTGATAGACTGTCATTTCTGACCTAAAAGTCTGATCATTTTACATCTGTTCAGACATCTTTGCAGCCTTTCGGTGTCAGTTCCAAAGTTGTTAGTGGGAATTTCAAAGCCTTTAATAATCTAGCCCCACTTTGTTCACTCTCTGTGTAATAACCACATACAACAATTGGCTGCATCTCCATAGCACATGGTACTCCTCCCGTTGTCTTGGTTGTGCCAGCAACACTGGTTTTCGCTTTCTCTTCCTGCTTGTTGAGGTCATTTCCAAGGCCCAGGTCTTTGTGCTTTTTCCCAAGCTTCCCAGAGCTTCTTCCATACTCCCCTTACTTCCTGAGATTTAACTGTTCTCTCTTCAGCGCTTGTCTAGTAAGAAGGAGGCAGCAGCAGCACTGTGGGGTGGTGGAAAGTGTACCAGCTTTAGAGTCAGACCATTGGATCTCAGCCCTACCATTTTCTACTTAGATTTTTTTAGGACAAATTTCTCCATCTTTCTAAGCCTCCAATTGCTCACTTACAAAATTGATATAACATTTACCTTGCAAGATTGGTATGGAAGGTAATTAACCCAGTATTTAGAACATAGTAATTAATAAATAACTATTATTACCATCATTACTATAGTTAGGACACTCACTGTTAGGTGCTATACAAAGAGGATCATAAAAGGGATGTTGTCTTGGGCTTCTTGGAATAAATGTTGTCCTTTTACTGTATTTTAGAATATCATTCTGGGTCATAATTGTTTGTTGTCATAATAATGAAACATACTTGAATATTAAATTACCCTCTTTTTTTATTTTTTAG
Seq C2 exon
CCATGTTAGAAGGTTCCCCACAGCTGAATATGGTTGGCCTCTTTCGACGAATTATTTCCAAAGAAGGAATACCAGGACTTTACAGAGGCATCACCCCAAACTTCATGAAGGTGCTCCCTGCTGTAGGCATCAGTTATGTGGTTTATGAAAATATGAAGCAAACTTTAGGAGTAACCCAGAAATGATGTTGCATTTTTTGCTTTAGCCTGATAATTGAAACTTTCAACAATCTCTGGAGTGACTTTTTCTCCTCGAATTGAAACAAGTCTATGGCAAAAGAAGCTGCATTTTTTTCACAAAAGGGAAGATGGTAACAATGGTCACTTCAAACTTTTGGGCTAAATTATATGTACACAGAAATGTTCAAAATCATAGTTTTAATGTGTTTTGAAAAGGCCACACAATTATACTTTATCTTTTCTTAATAATCCTGCAAATCTCTGCCCTGAATCCGAAATCTGAAAATGTACTGGCTTGAACAAAATTTGTTTTGTGTGTTAGAGTTATAAATCATTAATCTTTATTTCGGGTGGTTTACGTTTATGCCAGTTCCTTTATATTTAAATTTCTTGTTTTATATATTTTGAATGTCTTTATAGATTTCTTTAAATTTCCTTATAGAACCATTAATAGAAAATCATTACATTTAAAATATACCTTACAGCAAAAGCATCCAAATAAGTATAGGGTTTATGTCCTTATTTTTCTTTCAGCTGAATACGAATGAACACAGTGGTGGAATTTCTGAAGGGAAGTGATGAAATTATATTTATTTCAGTGGGCACTTTTCCATTTTACCACTGTACCATTATTTGGTTCCTGGAGTTATACACTAATTTTCAGTATATTACTGTTAAATTACCAACACAAGGCAATTTATTTGAAAGATTCCGTTTATCCTGCCATTGCTTTGAAAAGCAGCAGGAAACGAAATCCTTTGACTTGTATCAGCTTCTGCAGAGCATCTTTGTTTTCCTTTGTCCTTTGTTTCCTACCTTTTGAATCAGATTCCGTTTTAGTCAGGAAGACTTCTTGGGACCATTCTTAGTAACCTGAAATTTCTTTTTTAATTGCATGAAGTGGATTGATCATGAGCAAATGATGTGCTTATTTCTCCCTCACTGTTGAATATCTTTGAACTTGCTGTTTTCAATATGGGCAGCACAAAGGTGAGAGATACATATTAATAGTAGTATGTATTACTCTTATACATTAGATACCTATATTTAAATGAAAGGCCCAATTTGTAAACATATACATTCATATTCTCTCTTGCCCCAAGTTTTAGGAACATGTTAGGATATAGGAGACTTAATTTATAATAATGAGAGCATTTTTTTATTTTACTAAAGCCATTTTTATAGTCAACTATCTTTTCTTATTTGTGTGATTAGAACTTAGAAAAATATTTACTAGTTGAAGTTATTATCAGTTTTTAATTTAGTTCTTAAACTCATTTCACTTCTAATAATTTCTGTTATAAATTTCCAGCATTTTAATGAAAATCTAATGATGTAATAGGCATTTTCTTTATTTGAACCTACCTCTTTTATTTTCTGAACCAAAGAGAAAGATGGACTGGTGTTTGTGAAACATTTTTAAAAATGTAGTTTCATTTATATTAGTTATGTTTGATAAATGTCTCAGTATTTTTATAATATGATAAGCCTGGGATTCTACTTTTAGGGTTATTTGTACTTTTGAGTAATATATAAAGTGACAATATTAAGGTACATGATCAGCTCTTTCTATTTTTACTCGTAAAAATTATGGAAATGAATAATTTTGCTAACAACTTTGAAATTTCAAACTTCTGGAAAATATGAAAATATTCATTGTTCATTATGAATTTAAATTGTAAGGTATGAATGTGATTTGTCTGTACATCTTGTATCTTTTCCAAAAAATGATTCTGTATCTTTTGGAAAAAAGCCGAGAGTTGAAGATAGTATATTTCTGGTAGTACTGAATATTTACTTACAGTTTCTATCAAAAATATATATTTGTTTCTAAAATTACTTGTTTTCCAGTTTTTATTTTTTTTAGAGAAAATTCTTAAGTCTCAGTTTCCTAATTGAAAAAAAAAAATTATAAATAAAGCAAAAATTGTATCCTACAGCTTAGCTAGCTTAGATGTTTGGCACCAGTTTGAATCATGCTTTTTACAGCTGGCTCCATGTAGTCTTTCCAAACATTTTGGCCTTTCCTGAGCAGCCCTTGTAGATATTGTCTGTATGATGCATTTTGACACAAGGTGATATTTTTTGTGATATCAAAATTCCACATTTACCCATTAGAGTTACAGCCCTGGGGTTCACAGTACCAAGGGGGACCCAGAGCCTCAGGATTGGCCAGGCTCATTTTGCCGTGGAGTATCAGTTTGTCTTGAAATTGTGGGAAAAAATTCTAAGTTGAATTCACTGGTAAGTAATTTTTTAAAATTTCATAATGCAGATTACATCCAAAATTTGATTTAAAAATTAAAACATAAGACTGCAGAGAAATTCTGCATTTCAACTCCAATACTATCCAGACTTCAGAAATAACTTATCAGTTATTTCTGTAAGCTTCTTGCTTACCTGGATACCTGACAGGTGAGATGGCTGTAGCAGACACTGGCAGTTCCCTGCCCACACACCTGTCCCTGTCCACAGCTGCACAAGGCAGCTCTGTGTGCAATTGCCAGCATCTGCTCCTCTGTTCTCAGGGAATCTTTGTTAGAAAAATGCTGCCATATTTGTTTCTCACCTATTAGTCTTGTCTCCCAGTCAAGAGAATAAATTTATGCAAGCAGAGATTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085491:ENST00000565488:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
A:
NA
C2:
PF0015322=Mito_carr=PD(61.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains