HsaINT0151753 @ hg19
Intron Retention
Gene
ENSG00000085491 | SLC25A24
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 [Source:HGNC Symbol;Acc:20662]
Coordinates
chr1:108677447-108681830:-
Coord C1 exon
chr1:108681680-108681830
Coord A exon
chr1:108679460-108681679
Coord C2 exon
chr1:108677447-108679459
Length
2220 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
CCTCTTTTTTTATTTTTTAGCCA
3' ss Score
9.36
Exon sequences
Seq C1 exon
CTCTTGAAGTCCTATTGGCTGGATAATTTTGCAAAAGATTCTGTAAACCCTGGAGTCATGGTGTTGCTGGGATGCGGTGCCTTATCCAGCACCTGTGGTCAGCTGGCCAGCTACCCATTGGCTTTGGTGAGAACTCGCATGCAGGCTCAAG
Seq A exon
GTGAATTTTTGATTACAGAACCACACCGATAAAAGTGCTGCACCAGTAATGTGCTTTTAGAACTCCAAGTTCTACTAAGATGCAGACTGTAGTTTTAAGACAGTATTTCTCAACCTTTTTTTCATTATTGCCTCCTTAAGGAATCTTTTCAGAAATTCTTTTTCTAAATGCTCCCTCGTCATGAAATTTTAATGCGACAGAAGCATTGCATATGTACTGTATGCATACATATGCCTTATAGATAAACAGAGTACTATTTTTTTTGACTGTGTTACATGCACGTTTTAAGATTATAAGCTTTAGTATCTGATGGATTTGGGTTCAGATCCTTGCCTCAGACTTCTTGGGGTTTTTAATGGGAATGAAAATTGTACAGTGTTGTAAGAATTACCAACAATATAAATAAAGCATCTTGGGTTTGTTAAATTTTTGGTAAATGGTGGTTGGAATCATTTTTTAGTGTTGCGTAGACCCTACAAGTTTTGAGCTGTGATTCCTCCTCACTGTGACAGTCTCCATTGTTGGCTTTGATTACACTGTACCATCCTGGTTGTTCTGCCAGCCCATTGATAACTTTTACCATTTGCTGGCTTTTATTGCTATCCCCACTCTATTAAAGTATGCATTCAAATGCCTTTCTTTTCTCTTTGATGCTTTCCCTGGTCAGTCTTATCCATTGTTTTCTTAAGTAGTACACCTTGGGCATCTACAGCTCTATTCCCAACCTCCCTTCCAAGTGCCAGCCACAGCAACCCCAGCCAAGCAGTCAGTAACTAATTGGCAAATACTCCCTGAGCCATTGTCCCATTCTAGACACTGCCAGATGCTAGGGGTAGAGCAGTCAACAAGTCAGGTGTGGCCCCGCCAGTGTAGAGTAGAGAAGACGTTATGTCCAGCAAGTAAACAACCTGGTTAAACCAACTCCTCTTTTGTTAGGGGAGCACAGAGCAAGGAGCTATAACCTAACTTGGGCGCTGCAGAATGCTGTCAGTGAAGCTGAGACTGGAAAGATGAGTGGGAGTTAGCTGGGCACAGGCCAGTGGAGTGGGAACAGAAAACATTCCAGTTGAGGGAAAGCATGTGTGAAGACACTGAGGCAGGCACCAACATGGTGTATTTAAGGAGCTGAGAGACAGTCATGGCTGTAGAGAAAAACACAAAGTAGTGAACTACACGTTTCTTGTGTATTCTCTCATTTCACCATCATAACCATCTTGGGGATGGGAATACTAACATTATCCCCATTTTTCAGATGAGCAACTGGGGCAGAGAGAATTTAAGTAACTCCCACAAGATTATACCTGTGGTAAATAGTGGGACTGAAATTCAGACACATGCAGTCTGATTCTAACCCTCCTGTCTGCCAGCTCTGATCCAGAACTTTGCATGACTGATACGGCTGATAGATTGTCTATGGCTGATAGACTGTCATTTCTGACCTAAAAGTCTGATCATTTTACATCTGTTCAGACATCTTTGCAGCCTTTCGGTGTCAGTTCCAAAGTTGTTAGTGGGAATTTCAAAGCCTTTAATAATCTAGCCCCACTTTGTTCACTCTCTGTGTAATAACCACATACAACAATTGGCTGCATCTCCATAGCACATGGTACTCCTCCCGTTGTCTTGGTTGTGCCAGCAACACTGGTTTTCGCTTTCTCTTCCTGCTTGTTGAGGTCATTTCCAAGGCCCAGGTCTTTGTGCTTTTTCCCAAGCTTCCCAGAGCTTCTTCCATACTCCCCTTACTTCCTGAGATTTAACTGTTCTCTCTTCAGCGCTTGTCTAGTAAGAAGGAGGCAGCAGCAGCACTGTGGGGTGGTGGAAAGTGTACCAGCTTTAGAGTCAGACCATTGGATCTCAGCCCTACCATTTTCTACTTAGATTTTTTTAGGACAAATTTCTCCATCTTTCTAAGCCTCCAATTGCTCACTTACAAAATTGATATAACATTTACCTTGCAAGATTGGTATGGAAGGTAATTAACCCAGTATTTAGAACATAGTAATTAATAAATAACTATTATTACCATCATTACTATAGTTAGGACACTCACTGTTAGGTGCTATACAAAGAGGATCATAAAAGGGATGTTGTCTTGGGCTTCTTGGAATAAATGTTGTCCTTTTACTGTATTTTAGAATATCATTCTGGGTCATAATTGTTTGTTGTCATAATAATGAAACATACTTGAATATTAAATTACCCTCTTTTTTTATTTTTTAG
Seq C2 exon
CCATGTTAGAAGGTTCCCCACAGCTGAATATGGTTGGCCTCTTTCGACGAATTATTTCCAAAGAAGGAATACCAGGACTTTACAGAGGCATCACCCCAAACTTCATGAAGGTGCTCCCTGCTGTAGGCATCAGTTATGTGGTTTATGAAAATATGAAGCAAACTTTAGGAGTAACCCAGAAATGATGTTGCATTTTTTGCTTTAGCCTGATAATTGAAACTTTCAACAATCTCTGGAGTGACTTTTTCTCCTCGAATTGAAACAAGTCTATGGCAAAAGAAGCTGCATTTTTTTCACAAAAGGGAAGATGGTAACAATGGTCACTTCAAACTTTTGGGCTAAATTATATGTACACAGAAATGTTCAAAATCATAGTTTTAATGTGTTTTGAAAAGGCCACACAATTATACTTTATCTTTTCTTAATAATCCTGCAAATCTCTGCCCTGAATCCGAAATCTGAAAATGTACTGGCTTGAACAAAATTTGTTTTGTGTGTTAGAGTTATAAATCATTAATCTTTATTTCGGGTGGTTTACGTTTATGCCAGTTCCTTTATATTTAAATTTCTTGTTTTATATATTTTGAATGTCTTTATAGATTTCTTTAAATTTCCTTATAGAACCATTAATAGAAAATCATTACATTTAAAATATACCTTACAGCAAAAGCATCCAAATAAGTATAGGGTTTATGTCCTTATTTTTCTTTCAGCTGAATACGAATGAACACAGTGGTGGAATTTCTGAAGGGAAGTGATGAAATTATATTTATTTCAGTGGGCACTTTTCCATTTTACCACTGTACCATTATTTGGTTCCTGGAGTTATACACTAATTTTCAGTATATTACTGTTAAATTACCAACACAAGGCAATTTATTTGAAAGATTCCGTTTATCCTGCCATTGCTTTGAAAAGCAGCAGGAAACGAAATCCTTTGACTTGTATCAGCTTCTGCAGAGCATCTTTGTTTTCCTTTGTCCTTTGTTTCCTACCTTTTGAATCAGATTCCGTTTTAGTCAGGAAGACTTCTTGGGACCATTCTTAGTAACCTGAAATTTCTTTTTTAATTGCATGAAGTGGATTGATCATGAGCAAATGATGTGCTTATTTCTCCCTCACTGTTGAATATCTTTGAACTTGCTGTTTTCAATATGGGCAGCACAAAGGTGAGAGATACATATTAATAGTAGTATGTATTACTCTTATACATTAGATACCTATATTTAAATGAAAGGCCCAATTTGTAAACATATACATTCATATTCTCTCTTGCCCCAAGTTTTAGGAACATGTTAGGATATAGGAGACTTAATTTATAATAATGAGAGCATTTTTTTATTTTACTAAAGCCATTTTTATAGTCAACTATCTTTTCTTATTTGTGTGATTAGAACTTAGAAAAATATTTACTAGTTGAAGTTATTATCAGTTTTTAATTTAGTTCTTAAACTCATTTCACTTCTAATAATTTCTGTTATAAATTTCCAGCATTTTAATGAAAATCTAATGATGTAATAGGCATTTTCTTTATTTGAACCTACCTCTTTTATTTTCTGAACCAAAGAGAAAGATGGACTGGTGTTTGTGAAACATTTTTAAAAATGTAGTTTCATTTATATTAGTTATGTTTGATAAATGTCTCAGTATTTTTATAATATGATAAGCCTGGGATTCTACTTTTAGGGTTATTTGTACTTTTGAGTAATATATAAAGTGACAATATTAAGGTACATGATCAGCTCTTTCTATTTTTACTCGTAAAAATTATGGAAATGAATAATTTTGCTAACAACTTTGAAATTTCAAACTTCTGGAAAATATGAAAATATTCATTGTTCATTATGAATTTAAATTGTAAGGTATGAATGTGATTTGTCTGTACATCTTGTATCTTTTCCAAAAAATGATTCTGTATCTTTTGGAAAAAAGCCGAGAGTTGAAGATAGTATATTTCTGGTAGTACTGAATATTTACTTACAGTTTCTATCAAAAATATATATTTGTTTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085491-SLC25A24:NM_213651:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
A:
NA
C2:
PF0015322=Mito_carr=PD(61.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)