RnoINT0136928 @ rn6
Intron Retention
Gene
ENSRNOG00000020470 | Slc25a24
Description
solute carrier family 25 member 24 [Source:RGD Symbol;Acc:1311982]
Coordinates
chr2:211963103-211967505:+
Coord C1 exon
chr2:211963103-211963253
Coord A exon
chr2:211963254-211965376
Coord C2 exon
chr2:211965377-211967505
Length
2123 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTGCTTCTCTGTTTGCCAGCCA
3' ss Score
6.68
Exon sequences
Seq C1 exon
CTTTTGAAGTCGTATTGGCTGGATAACTTTGCAAAAGACTCTGTCAACCCTGGTGTGGTGGTGCTGCTGGGCTGCGGAGCCCTGTCCAGCACCTGTGGGCAGCTGGCCAGCTATCCTCTGGCTCTGGTGAGGACTCGCATGCAGGCACAAG
Seq A exon
GTGAGTTTGGGTTCCAGGGTGGCCATGGTGACACTTCACGTCCCTGACATGCTTTTGAAACATGCACACATGCATGCACACACACACTCTCTCCCTCCCTTCCCCCCTCTTTCTCTCTCTCATTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATGCTACTCTTCTGTAGAAATAGTAATCCATGTTTTAAGAGCATAAGGTTTAACGTCCAGCAGATTTGCGCTCAGGTCTTAAACCCCCCCCCCCCCCGTTGTCTTCCATGAATTGGGATTATTGGCAGTATGTGTAAAGAATTGGGCATTTGCTAAACTCTTAAAGAAGGTGGTGGCCTGACTGCTCGTCAGCACTGTTCACACCCCTGGCTTGGCACTGAACCCTTCTCTCTGTGCTGGTCTCTCAGCTGGTTCCCAGCTTGTGCTATCCTTCCTGACTTCTGTCTGCCCGCTGTTTTTCTGGCTGCCTGCCCTGTGGAAACTTACTCTTTGTCTTGCTTTTCCGCTCTTCTTTGTCCCTGGTCATATTCATCTACTGTAATCTCTCTCATGAAAGCACCCTGGGCACTGGGCCCCACCCTACCCTTCTTCCCATCACAGTTCTAGCCTAACCTGAGCTGAAGCCTAGGACTTCAGTGCAGGAGCTGGGCACCGGCCTGCAGTGGCGCCTTTGAGGAGCTGAGAGGCAATCATGGCTGCAGAGAGGAATGCAAACTAGCAAACTAAACGTGGTGGTAGCCAGGGTGACCACTTTTGGAAGTTGATACTAAAATCATCCATATTTGGCAAATGACTAACAGGCAGGAACAGTTGAGGAATGTCCACAAGGTGGTGGGTCTGAGCTGGAGTCAAGCTGGAGTTCAGACCCACTCCGGGATTTAAACCCATGCACAGTGAGCCTCCCCCTCCTGCCAGCTCCAGTCCTGGCCTAGCATGGCTGCCAAGATCCAGCATTTTTCATCAAGTCCCAAATATTTTGTGTCTCTTCAGACATTTTCTGTAACTCTTCAGTGTTTTCAGAATAAATTCCAGAGTTCTCAGAGGGAGTTTCGAAGGCTTCAGCAACCATATCAGCTTAGTTCCACGTCTGTCCTCTGATCCCCCATTACGCTGCTGTGTGGCATTTCCAGATAGGGCAAGGACAGACCAAAGAAACAGGTCCGCCCACATTTAGCATAGTGCTTCGGTGAGTCTGGCGGGGTTCTTCCTGGAGCTTGGGTGATAGCTTCATCACCAGTAGCCCATCGCCCGCAGCCAGCACGATCGACCACCCACAGAAGCTGAATCTTTGGAGCTCCCTGCGTAACCTGCGCGAGAGAGCGGTGCTGGCCATAGTAGTTAGAACCGCTCATGTAACCCCAGGGACCAGGGAGCCGCCCTGTGAATCGTCTGGTTTCAGAAGCTGTCACAGCCTGGTTTACCTCCTTAGTCTTAGGGGTTTCTGTATCCTTGGAAGTGCTCCAACTTGTAGGAAATAGTCAAATAACCCAATGTGTGGGCATCTCCGGCTCCTGATATCCTATGGGTCATAATTACATCCAGTGGTCACCTATCCCCTCCCCCACGCCTGTTCCCGCCTTAATCTTTTGTTGTACCAACAGTTCAGGGCTGCCTCCTCTTCTTCCCGCCCCCCTTCGTTTTTTTTTCTCCTACTTTCTTCACTCCTCTCTCTGCCCCCATTGAGATAATTCCAAGGCCCAGGTCTCTGTACTCTTTCTAAACATCTCCAAATCTCCCCTTTCCCTATTATCCAGAATTTAACCATTCTAGTCAGTGCTTGGTGGGTTTGCTAACTAAGGCGTTAGGAGAAGCTCCTTGTCTTTCCCATTTACAGTTCCTGATGTATATATTTATCCAGGAGGGCTGTCACGGAGAGTAGTTGACCTAGTTTCTAGCACATTTCTCATTCATAATGAGCTTCTGTGCCTGTCATTGCCACTCACTGGTGGGTGCTGCCTAAAGAGAGTTGCTGTTGGAACTGGTTTTATCGGTTCATTGTGTTCTAGACCCCGCTGTGCGTCTCCAGCTGCCTGTTGTAACAATGATTCATGCTTAAATATTGGGTTAGCCTGGTTCTTGCCATTTTCATTTATTTATGCTGTTTGTCTGCTTCTCTGTTTGCCAG
Seq C2 exon
CCACCACAGAGGGAGCCCCACAGCTCAGCATGGTTGGCCTTTTTCAGCGAATAGTCTCCAAGGAAGGAGTGTCAGGACTTTACAGAGGCATCACCCCAAACTTCATGAAGGTGCTCCCTGCCGTGGGCATCAGCTATGTGGTGTATGAAAACATGAAGCAGACGCTAGGAGTAGCTCAGAAGTGAGCGGTCCCAGCCTTTGCTTTTCCACGATGACCGAGGCTGTAGTGCCCCCCAGTGACTCCTGGGATTGCAGCAAGTCTATCACAAAAGAAGCTGATTTCCCCACCAAAGGGAAGAGTGTAGGGTGATCGCCTCAAGCCTTTGGGTTCAGTTTTGTACCTTCAGTAATGTTCTGAATCATAGTTTTAGTGAAGAAACCACAAAATTGTACTTTATTTTTGCTGATAGAGATCTCTGCCCTGCACCAAATCTGAAAATGCACTGGCTTACGCTGAAATCATTTTGCGTGGTAGGACAATAAATCATCAACCTTTGTTCCCATTGGTTCCAGTTCATATCGATTTGTTTTTACACAAATTTTTAAAAAATCCAAAATGATCAGAAAGCCCTGGGACTTAAATTGTTTTTTTTTTTATATATATATATTTTGGATGTCTTTGTAGATGTAATGACCCCAACGGAGACATTAGTAGAAAAATCACTATATTTAAAATCGAGCGTGCAGAGTTTATCTCCTTGTCTGTAAGCAGAATAGGAGTTATAGAAGCCACATTCAGTGACAGGAGCGGTGCTGTCATGTGCATTTCAGTGGACATGCTTCTATTTGCCCTGCTGTTTGGCCCCCAGTTTTAGACCTTGATTGACATTGTTGTCACATTATTGACAGGAGACAGGTCATTTGGGAGATCCTATTTATTTGAAGATCCTATTTATTCGGTCATTGCTTTGAAACGCATCATTGATCAAAACCGTGACTTGTACCATGTCCCAGAGAGCATCTTGGTTTTGTTCATTTTTTATGAGTTTAATCAAATTTTCTTAATCAGGAAGGCTCCTTGGGACCTTCATAGTAAGCTGAAGCTGCTCTTCTCCTCACCTGAGTGTTGATTTCAGGTCAATGGCCGGCACCCTCACTTCCCTCTTACTGTTGAAGTCTCTGAACCTGTGGTTCTCAAATGGAGCGGCGCAAAGCTAAGGCACCAGCGCATTTCAGTAGCAGGATATATCCATCTTACGTGTTTTAATGAAAGGTGCAGTCTGTGGTCATATGCGTCTACATGTTCACTTGCCTCAACATTGAGGAAGGTGACAGAAAATTTGTAACATGTAAAAGCATTCAATTTTTTAAACTAAAGCTGATTTTTTAGTCAGTTATCTTTTATGATTTGTTTTAAAACTTAGAAGAAAAATCTTATTTCTTCTATAAGAAGATAATCTTAGCCCAGCAGGATTGGCACATGCCTGTAGTCCTAGCACTCAGGAGGCAGAGGCAGGCGGATCTCTGAGTTCAAGGTCAGCCTGGTGGAGAGTTCCAGGGCAGCCAGGGCTACACCGAGAAACCCTGTCTCCAAAACAAAAACGAAAACAAATAAACAAATGAAGATATTTTAACATTTTAAGATTTAGTCCATGTTCTCATTTGATTTCTGGTAATTTCTGTACGGTTGCTTTCTGAAAACTGTAGTAGAAATCTTTGCCTTTAACCTACCTACCTACCTCTTTTATTTTTTGAACCAAAGAGAAAGATGGCCTTGTGTTCATGAAGTTATTCTAAAACATAGCTTGATTTGTAGTACGGATGCCTGCTAGTGTCTTGGTATTTTTGTACTTTATAAGGAAAGGAAGGGACTCTATTGTACTTTGGAGTAATACATAGAAGGACAGATGTAGGTACATGATTCACTCCTTTTTTACTTGTAACAATTATGAAAATGCACAATTCTGTTAATGTCTTTGGAATTTTAAGCTGGTAAAAACTATGAAAATAGCCATACTTCATTATGAAATTAAATTGCCCCCCCAGCATACATGTGTAAGGTATGACTGGTTCGTTCATCTGTACATCTTGTATCTTTTGGGAGAAAAAACTGTCCTGTTGATCACAGCTTATTCTGATATTGCTACACAGTTACTGCTCATTTGTATTAAAGATATTTGTCTGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020470:ENSRNOT00000027765:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
A:
NA
C2:
PF0015322=Mito_carr=PD(61.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]