BtaINT0135285 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40242527-40242899:+
Coord C1 exon
chr7:40242527-40242722
Coord A exon
chr7:40242723-40242803
Coord C2 exon
chr7:40242804-40242899
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
ACCGCCCACACTGCCCACAGCTG
3' ss Score
8.62
Exon sequences
Seq C1 exon
GGCCTTCGCGGGGGCTACTGTACACGACTGCTTTAACTGGTTGTCAGTTCTGGTGCTGCTGCCCCTGGAGGCTGCCACAGGGTACCTGCACTGCATCACTCGACTTGTGGTGGCCTCCTTCAACATCCACGGCGGCCGCGATGCCCCTGACCTGCTCAAGATCATCACGGAGCCCTTCACTAAGCTCATCATCCAG
Seq A exon
GTAGAGGCAAGGCGGGTGTGGGGTGGGGCCCAGGGGATTGTAGGACCTCACCCTCACACCCACCGCCCACACTGCCCACAG
Seq C2 exon
CTGGACAAGTCTGTGATTACCAGCCTTGCCTCGGGGGACGAGTCCCTGAGAAATCACAGCCTCATCCGGGTCTGGTGTTACCCAGACCCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351:ENSBTAT00000027121:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(29.0=63.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACTGCATCACTCGACTT
R:
CCCGGATGAGGCTGTGATTTC
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]