HsaINT0152505 @ hg38
Intron Retention
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr5:177387994-177388372:+
Coord C1 exon
chr5:177387994-177388189
Coord A exon
chr5:177388190-177388276
Coord C2 exon
chr5:177388277-177388372
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TGCCCACATCTTGCCCACAGCTG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GGCCTTCGCGGGGGCCACGGTGCATGACTGCTTTAACTGGCTGTCAGTGCTGGTCCTGCTGCCCCTGGAGGCTGCCACTGGCTACCTGCACCACATCACTCGACTTGTGGTGGCCTCCTTCAACATCCATGGTGGCCGTGATGCTCCTGACCTGCTCAAGATCATCACAGAGCCCTTCACGAAGCTCATCATCCAG
Seq A exon
GTGACAGCAGGGCCTGGCATGGGGTGAGGGTGGGGGTAACAAGGGACCCAGCCTCCTTCACTCCCCCTGCCCACATCTTGCCCACAG
Seq C2 exon
CTGGACGAGTCTGTGATAACCAGCATTGCCACTGGTGATGAGTCCCTGAGGAACCACAGTCTCATCCAGATCTGGTGCCACCCAGACTCCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183:ENST00000324417:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCTGCACCACATCACTC
R:
CCTCAGGGACTCATCACCAGT
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains