DreINT0150643 @ danRer10
Intron Retention
Gene
ENSDARG00000028824 | slc34a1a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
Coordinates
chr14:828273-828888:-
Coord C1 exon
chr14:828693-828888
Coord A exon
chr14:828369-828692
Coord C2 exon
chr14:828273-828368
Length
324 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGGTGTTTTTTTTCTTCCAGCTG
3' ss Score
10.32
Exon sequences
Seq C1 exon
GGCATTTGCGGGAGCAACGATCCACGACTGTTTTAACTGGCTGTCTGTGCTGGTTCTGCTGCCGCTGGAGGTGTTTTCGGGTCTGCTCAGTTTTCTGGCCAGAGTGACGGTCAGCAGCTTTCAGATGCACAGCGGAGAGGAAGCTCCAGAGCTGCTCAAGACCCTCACTGAGCCCTTCACCACACTCATCATACAG
Seq A exon
GTGTGTGTGTGGGTTTGCCTGTGTGTGAGTGTGTTGTTTTAAGTATGGATGGGTTAATGTGCAGTGCATGCTACATATTGATGGTGTGGGGTATGGAAGAGTGGAAGAGTCTGTGTGTGGGGTGTTAAGTGTTCATTAGCCTGATGGTCTGAGGGAAGAAGCTTTCCTTCAGTCGGCTAGTGCGTGACCTCTGGTTAAAGGAAGATTGCAGGAGGAATGTTTGTTTATAATGCTGTTAGCGTGGATGTTTCAGTGTGTGTGTGTGTTCTGAGCTGTGTTTTCCATCAGTATCCTGCAGTAATACTGGTGTTTTTTTTCTTCCAG
Seq C2 exon
CTGGATAAATCCGTCATCACAGGCATTGCTCTGGGCGACGAGTCCATGCGGAATCACAGCCTCATCAAAGTCTGGTGCAAGTCCTCCGTCTTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028824:ENSDART00000148687:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(31.3=71.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAACGATCCACGACTGTT
R:
CAAGACGGAGGACTTGCACC
Band lengths:
278-602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]