RnoINT0137606 @ rn6
Intron Retention
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9758966-9759363:-
Coord C1 exon
chr17:9759168-9759363
Coord A exon
chr17:9759062-9759167
Coord C2 exon
chr17:9758966-9759061
Length
106 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTCTCTCTCTCTCTCTCAGCTG
3' ss Score
11.54
Exon sequences
Seq C1 exon
GGCTTTTGCAGGGGCAACAGTGCATGACTGCTTTAACTGGCTGTCTGTTCTGGTCCTGCTGCCCCTGGAGGCTGCCACGGGCTACCTGCACCACGTCACCGGGCTTGTGGTTGCCTCCTTCAACATCCGTGGTGGCCGTGATGCCCCTGACCTTCTCAAGGTTATCACAGAGCCCTTCACAAAGCTTATCATCCAG
Seq A exon
GTGAGGGCGGGACGTGCCATGGGATGGACAGATGTGGGACAGTGAGTGGCCCTACCTTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAG
Seq C2 exon
CTGGACAAGTCTGTGATTACCAGCATTGCCGTGGGGGATGAGTCCCTGAGGAATCACAGTCTCATTCGGATTTGGTGTCAACCAGAGACAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262:ENSRNOT00000033749:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(29.0=63.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGTCTGTTCTGGTCCT
R:
GGTTGACACCAAATCCGAATGA
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]