GgaINT0016680 @ galGal3
Intron Retention
Gene
ENSGALG00000003075 | SLC34A1
Description
NA
Coordinates
chr13:10214821-10215318:+
Coord C1 exon
chr13:10214821-10215016
Coord A exon
chr13:10215017-10215222
Coord C2 exon
chr13:10215223-10215318
Length
206 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTCC
5' ss Score
0.85
3' ss Seq
CCTCCAATGTGCTCTTGCAGCTG
3' ss Score
10.08
Exon sequences
Seq C1 exon
GGCTTTTGCTGGTGCTACAGTGCACGACTGTTTCAACTGGCTGTCAGTGTTGGTCCTGCTTCCGCTGGAGGTGGTGAGTGGGTACCTGCACCACGTCACCCGCCTGGTGGTGGCCACCTTCAACATCCGCAGTGGGAAGGATGCCCCTGCCCTGCTGAAAATCATCACGGAGCCCTTCACCAAACTCATCATCCAG
Seq A exon
GTCTCCTCGGGTTGGCTGCGTTGTCCCCAGGGGTGGTCCCCCAGCATTGGTGTCCCCATGTTAGCAATAATGTCCCTAGCACCAATGTCCCTGCAGTGGCAGTTCTGCCAAAGGCTGGCAGCAATGTCCCCATCACAGAGTAGGTATCCCCAGCCTGGGGAAGCTGCCAGCCCCCCAATGCTATCCCCTCCAATGTGCTCTTGCAG
Seq C2 exon
CTGGACAAGTCGGTGATCACAGGCATTGCGACAGGGGATGAGAGCCTGCGCAACCGCAGCCTCATCCGCATGTGGTGCGGCCCCGCACCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075:ENSGALT00000004859:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGCTGGTGCTACAGTGCA
R:
CCACATGCGGATGAGGCTG
Band lengths:
268-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]