BtaINT0140427 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99147878-99148689:+
Coord C1 exon
chr11:99147878-99147970
Coord A exon
chr11:99147971-99148554
Coord C2 exon
chr11:99148555-99148689
Length
584 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
CCCTTCCTTTGGATTTTTAGCAA
3' ss Score
7.12
Exon sequences
Seq C1 exon
GCTCTGCTAAAGAAGCACGAGGCATTGATGTCGGATCTCAGCGCCTATGGCAGCAGCATCCAGGCCCTGCGAGAGCAGGCCCAGTCGTGCCGG
Seq A exon
GTGAGCAAGGTTTTTCCTGTCAGCAATTGCGAGATCCCAGGGGTTGGGTGGGGGCCGGGGAGCAGGGGGGCCAAAAGACCCAGGTGCTGACAGCAGGTAGCACGATCATAGGTGACATTCTTTTATTTATGTGCTTTTAGCTGTGTTGGTCCTTCATTGCTTCATGGGCTTTCTCTAGCTGCGGAAAGCGGGGGCTACTCTTCTCTGTGGTGCACAGGCTCTAGGGCATGTGGGCTCAGTAGTTGGGGTACCCAGGCTCAACAGTTGAGGGCATAGGCTTAGTTTTTCCAAGGCACGTGGGATCTTCCTGGACCAGAGATCAAACCTGTGTCTCCTGCATTGGCAGGCAGATTCTTAACCACTGACCCACCAGGGAAGCGCCTGTAGGTGACTTTCCTGTGACCTTAAAGGTCCCAGACAGCTGAGCTTCCTGAATCAGATCTTGTTGGTGGGTTCAGAGGAGAACTGTCACCAGTGTATGTTTGGTGAATGTGGGTCTTCTGCTGAGGCTGGGATCTGCAGTGGCTGAGACGGCACTCTGGAGACATCCCGTAACTGTGTTTGCCCTTCCTTTGGATTTTTAG
Seq C2 exon
CAACAAGTGGCCCCCATGGATGATGAGACTGGGAAGGAGCTGGTCTTGGCGCTCTATGACTATCAGGAGAAGAGTCCCCGAGAGGTCACCATGAAGAAAGGAGACATTCTCACCTTACTCAACAGCACCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327:ENSBTAT00000020395:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=NA C2=0.178
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(35.7=100)
A:
NA
C2:
PF0043516=Spectrin=PD(17.9=33.3),PF0001823=SH3_1=PU(63.0=64.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGAGGCATTGATGTCGG
R:
CTTGTTGGTGCTGTTGAGTAAGG
Band lengths:
214-798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development