BtaINT0141584 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019712 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr29:36961791-36962113:+
Coord C1 exon
chr29:36961791-36961900
Coord A exon
chr29:36961901-36961982
Coord C2 exon
chr29:36961983-36962113
Length
82 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CAGCTGCCCGCCGCCCCCAGGTA
3' ss Score
8.02
Exon sequences
Seq C1 exon
GTGCCCGACAACAAAAACGTGAAGGTGCGCTTCAAAGCCTTCTTCCTGCAGGAGCCCAATGTCCCCGTGGGCTCCTGCACCAAGGACTACGTGGAGATCAACGGGGAGAA
Seq A exon
GTGAGTGTCGGGTGAGGGCGAGTGGGGGTGCCCCAGCCCCAGGTGAGTCTTCTTCCTCTGCTCAGCTGCCCGCCGCCCCCAG
Seq C2 exon
GTACTGCGGAGAGAGGCCGCAGTTTGTCGCCAGCAGCAGGAACAACAAGATCACTGTCCACTTCCACTCGGACCAGTCCTACACCGACACCGGATTCCTGGCGGAGTTCCTGTCCTTCGATGCCCGAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019712:ENSBTAT00000026272:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(34.6=100)
A:
NA
C2:
PF0043115=CUB=PD(34.6=80.0),PF0005713=Ldl_recept_a=PU(2.8=2.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAAAACGTGAAGGTGCGC
R:
CCGAGTGGAAGTGGACAGTGA
Band lengths:
172-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]