MmuINT0153104 @ mm10
Intron Retention
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:31100140-31100495:-
Coord C1 exon
chr9:31100386-31100495
Coord A exon
chr9:31100271-31100385
Coord C2 exon
chr9:31100140-31100270
Length
115 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGC
5' ss Score
5.01
3' ss Seq
GCCTCGCTCTTGCCCTCTAGGTA
3' ss Score
11.3
Exon sequences
Seq C1 exon
GTGCCCAACAACCGGAACGTGAAGGTGCGCTTCAAACTCTTCTATCTGGTGGACCCCAACGTACCAGTGGGCTCCTGCACCAAGGACTATGTGGAGATCAACGGGGAGAA
Seq A exon
GTGAGCCCCTAGGGGTGCAACCACATCCTGGGTATTGGGAGGGCTGGTCCCAGGCACCCCCAGTTGTCTGCTTGCCAGCCTCGCTGTCTCCCTCAGCCTCGCTCTTGCCCTCTAG
Seq C2 exon
GTACTGCGGTGAGAGGTCCCAGTTTGTGGTGAGCAGCAACAGCAGCAAGATTACAGTCCACTTCCATTCTGATCACTCGTACACGGACACCGGGTTCCTAGCTGAGTACCTCTCCTACGACTCCAACGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995:ENSMUST00000034478:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(34.3=100)
A:
NA
C2:
PF0043115=CUB=PD(34.3=80.0),PF0005713=Ldl_recept_a=PU(2.8=2.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCAACAACCGGAAC
R:
CGTTGGAGTCGTAGGAGAGGT
Band lengths:
238-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types