RnoINT0144080 @ rn6
Intron Retention
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32247970-32248323:-
Coord C1 exon
chr8:32248214-32248323
Coord A exon
chr8:32248101-32248213
Coord C2 exon
chr8:32247970-32248100
Length
113 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGC
5' ss Score
5.01
3' ss Seq
GCCTCACTCTTGCCCTCTAGGTT
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTGCCCAACAACCGGAACGTGAAAGTACGCTTCAAACTCTTCTATCTGGTGGACCCCAACATACCAGTGGGAAGCTGCACCAAGGACTATGTGGAGATCAACGGGGAGAA
Seq A exon
GTGAGCCCCTAGGGGTGCAACCACCATCCTGGATGTTGGGAGGGCTGGTCCCAGGCACCCCCAGTTGTCTGGTTGCCAACTGAACCTCCCTCAGCCTCACTCTTGCCCTCTAG
Seq C2 exon
GTTCTGCGGTGAGAGGTCCCAGTTTGTGGTGAGCAGCAACAGCAGCAAGATTACGGTCCACTTCCATTCTGATCACTCGTACACGGACACCGGGTTCCTGGCTGAGTATCTCTCCTACGACTCCAATGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903:ENSRNOT00000009139:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(34.3=100)
A:
NA
C2:
PF0043115=CUB=PD(34.3=80.0),PF0005713=Ldl_recept_a=PU(2.8=2.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCAACAACCGGAAC
R:
GGTCATTGGAGTCGTAGGAGAGA
Band lengths:
241-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]