HsaINT0159707 @ hg19
Intron Retention
Gene
ENSG00000149418 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:11344]
Coordinates
chr11:130066234-130066595:+
Coord C1 exon
chr11:130066234-130066343
Coord A exon
chr11:130066344-130066464
Coord C2 exon
chr11:130066465-130066595
Length
121 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
GTGCCCCGCCCCCCCTCCAGATA
3' ss Score
9.9
Exon sequences
Seq C1 exon
GTGCCCAACAACCAGCATGTGAAGGTGCGCTTCAAATTCTTCTACCTGCTGGAGCCCGGCGTGCCTGCGGGCACCTGCCCCAAGGACTACGTGGAGATCAACGGGGAGAA
Seq A exon
GTGAGTCCCCGGGGGTATGGGGGCTGCCGGGCCCATGCTGCAGGGGGAGGGGTCCCACCAGACCCCCAGCCCCCCGGCTCCCAGCTGTCCCTCCTCACCTTGTGCCCCGCCCCCCCTCCAG
Seq C2 exon
ATACTGCGGAGAGAGGTCCCAGTTCGTCGTCACCAGCAACAGCAACAAGATCACAGTTCGCTTCCACTCAGATCAGTCCTACACCGACACCGGCTTCTTAGCTGAATACCTCTCCTACGACTCCAGTGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149418-ST14:NM_021978:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(34.3=100)
A:
NA
C2:
PF0043115=CUB=PD(34.3=80.0),PF0005713=Ldl_recept_a=PU(2.8=2.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCAGCATGTGAAGGTGC
R:
GGTCACTGGAGTCGTAGGAGA
Band lengths:
234-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)