DreINT0156457 @ danRer10
Intron Retention
Gene
ENSDARG00000044655 | st14b
Description
suppression of tumorigenicity 14 (colon carcinoma) b [Source:ZFIN;Acc:ZDB-GENE-061103-613]
Coordinates
chr21:25248557-25251322:-
Coord C1 exon
chr21:25251216-25251322
Coord A exon
chr21:25248691-25251215
Coord C2 exon
chr21:25248557-25248690
Length
2525 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
AACATTTTCCATTGTTTTAGGAT
3' ss Score
10.85
Exon sequences
Seq C1 exon
GTTCCACCAGGAAAGCATATCAAGGTGAAGTTTGACAAGTTCTCCATACACAATCCTGAACAGAACATCATCAACTGCCCCACAGACTACCTGGAGCTCAACTACAG
Seq A exon
GTTAGACAGAAGTGTCTTTCATTTAAAGGCATCATTTACACAGAAAAGGTATTACTGACTGTTCAAATATAAATAAGTTAATAATTTACGCACCATTATTTGAAAGTTTGGATAAAATAATAGATTCATTCAACAAGATTACATTAAATTAGTAAATAAGACACTAATAATTCTGTTCTTTTGAACATTCTGTTCATGAAATAATTCTGAATAATTGTGTCATGTTTCCACAAAAATATTGAGCAACACAGATGTATTCAGCAATGGTTAAATAAATAAGCCACCAAATCATCATTTGAGCGCTGATGTCAAGATGCTGGAAATTCAGTTCAGAAAATTTACTCTGTCACAGGAATAAATCATATTTTAAATGTTTATATATTGTATATATTCACATAGAAAACAATTATTCATTCATTTTCTTTTCGGCTTAGTCCATTTATTAATCAGAGTTTGCCACAGAAGAATGAACCGCCAACTAGAGATCTGCGCGGGACTAAATTTTGAATCATGCTCCCGCCCGCACCTGCCAGGTTTTAAACCCGAACCCGACCGCTCCCGCTTATATTAAGCATTTGTTGTCCCGCTGCCCGACCCGCCCTGTTTTCTACCCACCGCGCCTGATTCCGCTAAAGAGCGGGGGGAGAACAAAACCGAAAATCACCCAGCTATACAGTCCAGACAGCCTATAACAAGCTGTCTGTATAAACACACACACACAAAGCACCAAGCACACATACACAGAAAAAAGCTCTCTCTCTCTCATTCGCGCGCGCACTAACATACACACTTAAGCACCAACCACACACACAGGCAAAGCTCTCTCTCTCATTTGCGCGCGCGCACTAACACACACACACACACAAGCACCAAGCACACACACAGGCAAAGCTCTCTCTCTCATTCACACACACACACACACACACACACACACACACACACACACCTCTCATTCGCGCGTGCGCACACATACACACACACACAGCAACAAACAAGCTAAACACAGCATCGCGCTATTTCATTTACACACATACATACGCGTGCTTGCTCGGGAGTCGGGAGCCATATTGCTAGACAGCCCGCTTCCGTCCCAAATTAAACCCGTTACCAACCGCTGCAAATGTATTGCAGACCTCTACCGCGAACTTATCCAGCATATGTTTATGCAGCGAATCCCCTTTCAGCTGCAATCCATCACTGGAAACACCTATACACTCTCAATCACACACATACACTACAAACAATTTAGCCTACCCAATTTTTCCTCTGGGTGTTCCAGTTTCCCCCACAAGTCCAAAGACATGTGGTATAGGTGAATCGGGTAAGCTAAACACTCTGAGCAGTCCTTCTTATTTGCGTCTAATATACCCCAGTTTGTCACGGGGGCATGAATGAAATGTTCATGAGTCAAAGTGAGACTGCCGAACTGCAGTTAAAGTCAGCCAAAATTACTGGAAACTCTTACATAAAAGCACTTCTCGTAAACACCTTAATTACATTATTGTCTATTAAGGCAAATAACTAGATTACAGAAGTCCATGTATGCGTAGTCAGTATATCTTCGAAGTAAGTGAAAGATCCAGAAGGGCATCCTGCTGATTTGATTCAGAAGGGCACTTTTTTGCCAGACGGCTCAGAGGTCAGGTTTACATTCGCGCTAAAATATCAAGGTGAAAGTCATCATAGCTAGCGTAGAATAGACCCATCTCCCAACCCAACTTTGAGAATAGATTAACGCCGATATTTTTTTTATTGTCCGATAAAAGTAACGCAGCACGTTAACGCCGATTGGCCCACCACTACTACTTATCTAGTGTTTCTTTCGGTAAAACTGAAACTAATACTAAAATGACTAATACTAAAAAGAATAATTGTTGATTGATTTCGTTCCAACTGCTATGAAATGTGTCTAAAAGAGATGTGATGTAGCACTGTTGCAGCTGGTTTGGTAAAAAAAAAAATAATAATATATATATATATATGCGTTTTTACTCTTAACTTTTAGGACACAATGTAAGAGTTTTTATCTCACTGTCCCCAATCGTTTGAATATTAGTGTAGATTTGCTAGCTACACTGTAAAAAATATATACTTGCAGTTGCAGTGTACTTTGCAGTTTTTTTTTTTTTATTTGGTGATTCATTTTATATTTTTCTCCAATTTTTGTTTTTAAATGTTTTTATTTTTCTTTATTTATGCTTTTGAATTGCATAATGGGACCTTGATATTTTTTCCTCAACAACTTTGAACCTAATAACAGTATATTACAGTACAAAAACCTTTTAATAAGCTGCCAGTTCATTTTCTGTTATTTTATAGGCTTATTTCTCTATATTTTATTTATTATTCATTAAATTATTTAAAATTACTAAAATGTCAATAAAAGTTACTTTGTTAAATTGCAGAGCTGAATATTCAGCATCAAAAATCAACAGAGTAGAGATTAACACACAATGCAAAATAGAAACTGTTCATTCAGATATTTTTCTACAGTGTACAGATTAAAACATTTTCCATTGTTTTAG
Seq C2 exon
GATATGTGGAGAGAAGCCACCTAAAACTGTGTACACAGTCAAATCAAACCAATTAACAGTAAAATTCAATTCTGACCGTTCCTATGTGAGTGAAGGATTTTCTGCAGAGTTTGAGGCCTTTGAACCCACCAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044655:ENSDART00000147860:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(33.3=100)
A:
NA
C2:
PF0043115=CUB=PD(26.7=77.5),PF0005713=Ldl_recept_a=PU(2.8=2.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]