BtaINT0142019 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002658 | STAM
Description
Bos taurus signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (STAM), mRNA. [Source:RefSeq mRNA;Acc:NM_001076842]
Coordinates
chr13:32437692-32438276:+
Coord C1 exon
chr13:32437692-32437779
Coord A exon
chr13:32437780-32438221
Coord C2 exon
chr13:32438222-32438276
Length
442 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CTTCCATCTCATCATCTTAGCAA
3' ss Score
5.93
Exon sequences
Seq C1 exon
GATAAAATGGACCAGTTGCTACAGATGTTGCAAAGTACAGATCCCAGTGATGATCAACCAGATCTTCCAGAGTTACTTCATCTTGAAG
Seq A exon
GTAAACCTTGTTTTCCATTTACCTTGCAAGTAAAAAATAATTAAGGGTTATATCTAATGTTCTCTTACAGAGTGCTTTTATTATTAAATAGAATTGAAGACGATATAAAAACTGTTAACATTTCTTGCTGTTCTGTGACCAGTCTCATGTTTACATGCAGTTTAAACCTTTGGTAGAATTCAAAATTTTATACTTTTCTACCCAAAGTAAATATTTTATTCAACATTTTAAAATGTTGTAAAATGAAGATTGGTACTAAAGTTTTCTGACAGCAATGCAATCAGTCAAAAGTATTGATTTTATAACTATTCAGGAAAACCAGTCTTGGGTTTTGTGGGCCTGAGGTTAATTGATAGAATTTTTATTATTCCAAATGACATCTTTTAGAGAGTTGCTGTCTTTTGCTGCATTGTCTTACATTTCTTCCATCTCATCATCTTAG
Seq C2 exon
CAATGTGTCACCAGATGGGGCCTCTCATTGATGAGAAGCTGGAGGATATTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002658:ENSBTAT00000003441:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=NA C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development