GgaINT0098830 @ galGal3
Intron Retention
Gene
ENSGALG00000008654 | STAM
Description
NA
Coordinates
chr2:19576608-19578412:-
Coord C1 exon
chr2:19578325-19578412
Coord A exon
chr2:19576663-19578324
Coord C2 exon
chr2:19576608-19576662
Length
1662 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTAATGTTCTTCTTTTCTAGCAA
3' ss Score
9.77
Exon sequences
Seq C1 exon
GATAAAATGGACCAGCTCCTGCAGATGTTGCAAAGTGCAGATCCAACTGACGACCAGCCAGACCTCCCAGAATTACTTCATCTTGAGG
Seq A exon
GTAAGAGAATCTCAGTTTTGTTATTTTTGTCTTCAGTAAATACCCACATCAAAACAAATCAAAACTTAGCTGAAACTACTTCATATGCACACCACTATCCTGCCTGAAGAAACTGCTTGAGCCTAAACTGTCATCTTCCTTCCTATTTCCCACATCTGAGAGACCAAAGTGCAAAATTTTCATTTAAAGAAAGCCCATTCCTTCTCGTAGTGGAACTGCATTGGAGCTTTTCTCACTTTTCGAGGCCCAGGAATACTTAATTCAGTATTCTCAGTTGTTTTTTCCCTCATGGAGTAGCACAGCTTGAGTTGCAAAAGGAATGTAAGGAAGACTCCATGAGAGGAGGAAGAATACTGCTGGGACTTAAAATAAATCTCTGGGTGTCCTCCTTGCTTTTCACTTGTGTTCATGTTTCTGTTGGACTGTATTGTTAAGAAATACCTTATAGAGTACTACAGATATCTTAGACTAGTCCTTTACACTCAGATTTATTCAGAATTCCTCTCAAAGAGGCATTACAGACTGTTCTGCCTGGCTTGATAAATGCAACAGAAGCTTTAGAAGGGGAAGTATGGAGAAGGAAGTAAAGGAACTTACCCACTACAGCACAAAACATTGGCTTAAATTTACAATCCAGATAGGAGCAGACTGTGTTAAGAAAGTAGCATATTCTGAATGAATCTAAATGTCTAGAGCATGACTCTCCATTTTGCACGTAGATTTTTCAGCTGTGAATTAAATAGGATACTCTCTAAGTTCTTATTAGCCGCTTAAGTTTACCAGCTGATCCTGATTTGTGTGACATCTTTGTTCTGCTCAGGAGATCTTTTCATGCATTTTCAGTTTGAAGTGTGAAATTGCAGAAGTGATTCCTCCATCTGAAGCCAAAAGTGCCATTGTTGGTTTCATCAGCTTCATAAGGGAAATTCAACATCCTCTTACCAACCTCCCTTTGCTCTTGAACCCAGAAAAAGTTTTTGTTACTGGATGTTCAGGATTCTGATATTTTGTAATTTTTGTTTGTTTGTTTTTCTGCAGTCTTATTTATTCACTAAATAAGACTGAGCTATTGCTTATTATGCACATCTCCCAGTTAGTAAATAGTTCATTGCTCGGAGAGGAAGGCAAGTTTTGCATTCTAATGTAGGGTTTGGCAGTAGAATCCCATTTCAGCTACCTTTCCTATTTACTTTACATTTGACAGAATCTGTCTTTTGCTTACCTAATTGTGCTTTGCATGACATTGCGGGGTGTGCTTTTGTTTTAATGTTCTTCTATTCTACTTCTGATAGATTTTTCTTTGTGTTGGTTTTTACATGTAGTGTCTTAGTGGTTTGAAAAAACCTTACTTGACAGGATCTCTCTCACCCAGTTAGTTAGGATTCCAGTGCAAGAGCAATGTGCTTTGTCTTTGTGCAGGATTTGAACCATTGCTATCTGTTTTCCCCTTAATTGTTTTCATAGATGATCTCTTTGTGGTACTGTTAATTGATTATTGCACTCATCTTAATTTTTCTTTCCTTTTTTCTTTTTTCTTTTTTTTTCTTCTTTTTGATTTTCACCTACACATTTCTATCTGATAATTTTCTTAAAGCTATTTTCTTACTGGCTGCATAGAAATCTTTATTACTCTGATAATATTTTAATGTTCTTCTTTTCTAG
Seq C2 exon
CAATGTGCCACCAGATGGGACCCCTCATAGATGAAAAATTAAAAGATATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654:ENSGALT00000014097:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]