HsaINT0160245 @ hg19
Intron Retention
Gene
ENSG00000136738 | STAM
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:HGNC Symbol;Acc:11357]
Coordinates
chr10:17746430-17747023:+
Coord C1 exon
chr10:17746430-17746517
Coord A exon
chr10:17746518-17746968
Coord C2 exon
chr10:17746969-17747023
Length
451 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTCACATCTTGTCATTTTAGCAA
3' ss Score
7.05
Exon sequences
Seq C1 exon
GATAAAATGGACCAGTTGCTACAGATGCTGCAAAGTACAGACCCCAGTGATGATCAGCCAGACCTACCAGAGCTGCTTCATCTTGAAG
Seq A exon
GTAAAACTTTTCTATTTACCTTGCAAATAAAGAGTAGTTAGAGGTTAATAACTGGTGTCCTGTTAAAGAATGGGTTTTGAGGATAATATTAAAAATGGAACATTTCTCACTTCTCCTTGACCCAGGCTCACTCTCATATGCAGTTGAAACCTTGGGTAGAATTTGAATTCTTATAATTTTCTATCCAAACGAAGTGTTCTGTTCAACATTTTAGAACCTGGTAAAATGAAAAATGGCACTTTAAGATTTTCAGATTAATATTTTAGATTAAGTTGTCACCATTATACTTTAAGAAAATCAATTTTGGGTTCTGTAGACTAAGGTTAAAGAATGTATATTTTTATTACTCCAAATTAAATCTTTTATTCCTTAAATTATACAAATATCTATCAAAGGTTCACATTTTTTTTTCTTGTACTTTCTTATATTTCTTCACATCTTGTCATTTTAG
Seq C2 exon
CAATGTGTCACCAGATGGGACCTCTCATTGATGAAAAGCTGGAAGATATTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136738-STAM:NM_003473:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)