RnoINT0144523 @ rn6
Intron Retention
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81247398-81247957:+
Coord C1 exon
chr17:81247398-81247485
Coord A exon
chr17:81247486-81247902
Coord C2 exon
chr17:81247903-81247957
Length
417 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
TTCAAAAATTGTCACCTTAGCGA
3' ss Score
3.52
Exon sequences
Seq C1 exon
GATAAAATGGACCAGTTGCTACAGATGTTGCAAAGTACAGATCCCAGCGATAATCAGCCAGACTTACCAGAGCTACTTCATCTCGAAG
Seq A exon
GTAACCTCATTTTCTATCTACATTATAAGCAGAGAGTAAACTGAGACCTTTCTTCCTCTACTGCTCCAGAATGGGCTTTGAGAGTAAGCTTAGAAACGGAACATTACACATTCTTCCTGTTCCTTTTTCACCTGTCATGTGCTGTTTAAATCTTGTGTAGAAGTTGAAAAAGCCTTACTATACAAATTATTTTATTCAACATCTTAATCTTGTACAATGAAAAAAGTATTTTGAAGTCAGTATTTTAAATTGTCACCATTTTATATTTTAAGAAAATATTTTAAGTTGTATTGATGAAGGATAATTGGTAATTTTTATTACTTCACATTAAGCTTTTCATTTCTTTATATGAATATTTTTCAAAAGTTTACTTTCTTTTGTTGTGTTTTCTTATTTCTTCAAAAATTGTCACCTTAG
Seq C2 exon
CGATGTGTCACCAGATGGGACCTCTCATTGATGAAAAGCTGGAGGACATCGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817:ENSRNOT00000077368:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]