MmuINT0153588 @ mm9
Intron Retention
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14059114-14059817:+
Coord C1 exon
chr2:14059114-14059201
Coord A exon
chr2:14059202-14059762
Coord C2 exon
chr2:14059763-14059817
Length
561 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
TTACTTTCTTGTCATCTTAGCAA
3' ss Score
5.65
Exon sequences
Seq C1 exon
GATAAAATGGACCAGTTGTTACAGATGTTGCAAAGTACAGATCCTAGTGATAATCAGCCAGACTTGCCAGAGCTGCTTCATCTTGAAG
Seq A exon
GTAACCTCATTTTCTGTCTACCTTACAAGCAAAGAATAAATGAGGTCTTTCTTGTTCTACTGCTCCAGGATGGGCTTTGAAAGTAATCTTAGAAAGGAAACATTACGGCCGGGCTGTGGTGGCACAGGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCATGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAACCAACCAAACAAACAAACAAACACCCCCCCCCCCCCACACACACACAAAAACCTTCGTGTGCTATTTGAATCTTGAGTAGAAGTTGAAATCACAAACCTTGCTATACAAATTCAACATCTTAATCTTGTACGATGGAAAAAACGTTTTGAAGTCAGTATTTTAAATTGTCACTATTATATTTTTAAAAAATCTATTTTAGGTTCTATTGATGAAGGATAATTAATAACTTCATTACTTCACATTAAACTTTTCATGTTTCTAATTATATGAATATTTTTCAAAAGTTTACTTTCTTGTCATCTTAG
Seq C2 exon
CAATGTGTCACCAGATGGGACCTCTCATTGATGAAAAGCTGGAAGATATTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-Stam:NM_011484:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: